Export Network To NDEx

Source: R/CyNDEx.R

Send a copy of a Cytoscape network to NDEx as a new submission.

exportNetworkToNDEx(
  username,
  password,
  isPublic,
  network = NULL,
  metadata = NULL,
  ndex.url = "http://ndexbio.org",
  ndex.version = "v2",
  base.url = .defaultBaseUrl
)

Arguments

username

NDEx account username
password

NDEx account password
isPublic

(Boolean) Whether to make the network publicly accessible at NDEx.
network

(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
metadata

(optional) A list of structured information describing the network
ndex.url

(optional) For alternative instances or deployments of NDEx; default is "http://ndexbio.org"
ndex.version

(optional) For alternative versions of the NDEx API; default is "v2"
base.url

(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

NDEx identifier (externalId) for new submission

Examples

# \donttest{
exportNetworkToNDEx("user", "pass", TRUE)
# }