Set Node Fill Opacity Mapping

Source: R/StyleMappings.R

Sets opacity for node fill only.

setNodeFillOpacityMapping(
  table.column,
  table.column.values = NULL,
  opacities = NULL,
  mapping.type = "c",
  default.opacity = NULL,
  style.name = NULL,
  network = NULL,
  base.url = .defaultBaseUrl
)

Arguments

table.column

Name of Cytoscape table column to map values from
table.column.values

List of values from Cytoscape table to be used in mapping. Leave NULL to perform an automatic mapping to all column values.
opacities

(integer) values between 0 and 255; 0 is invisible. A range of 50 to 255 is used by default for automatic mapping.
mapping.type

(char) continuous, discrete or passthrough (c,d,p); default is continuous
default.opacity

Opacity value to set as default for all unmapped values
style.name

Name of style; default is "default" style
network

(optional) Name or SUID of the network. Default is the "current" network active in Cytoscape.
base.url

(optional) Ignore unless you need to specify a custom domain, port or version to connect to the CyREST API. Default is http://localhost:1234 and the latest version of the CyREST API supported by this version of RCy3.

Value

None

Examples

# \donttest{
setNodeFillOpacityMapping('score')
setNodeFillOpacityMapping('score', opacities=c(0,100))
setNodeFillOpacityMapping('score', c(-5,5), c(50,255))
# }