Protein-Protein Interactions
Tools and Approaches
Slides:
https://cytoscape.github.io/cytoscape-tutorials/presentations/ppi-tools1-2017-mpi.html
John "Scooter" Morris
Alex Pico
Max Planck Institute for Biology of Ageing
27 November 2017
Today's Agenda
| Time | Topic |
|---|---|
| 10:00 - 11:00 | Introductions - Why are protein-protein interactions important? |
| 11:00 - 12:30 | Protein-protein interaction networks - I |
| 13:30 - 15:00 | Protein-protein interaction networks - II |
| |
| |
| 15:00 - 15:30 | Break |
| 15:30 - 17:00 | Introduction to Cytoscape - II |
| |
| 17:00 - 18:00 | Workflows |
Introductions
- 2010 - Current
- Adjunct Assistant Professor, Pharmaceutical Chemistry, UCSF
- 2004 - Current
- Executive Director, NIH Resource for Biocomputing, VIsualization, and Informatics
- 1985 - 2004
- Principal Systems Architect: Genentech, Inc.
- 2006 - Current
- Cytoscape core team
- Author or co-author of several Cytoscape apps:
- structureViz2, clusterMaker2, chemViz2, stringApp, CyAnimator
Introductions
- Associate Director, Bioinformatics
- Executive Director NRNB
- Cytoscape team since 2006
- Author of half a dozen Cytoscape apps
- Founder of the WikiPathways repository
Introductions
- Computational Biologist
- Structural Biologist
- Biologist
- Chemist
- Bioinformatician
- Computer Scientist
- Data Scientist
- Other?
What is this course about?
- Some background
- Some techniques
- Cytoscape - network visualization and analysis
- UCSF Chimera - structural visualization and analysis
- It's what our lab works on ☺
Why?
- You tell me...
Why?
- Each person:
- Name
- Introduce your image
- Please keep it short
- Choose one image to present to everyone
Hands-on Tutorials
Questions
- Specific workflows you are interested in?
- Any specific "How to" questions?