Differentially Expressed Genes Network Analysis

Cytoscape is an open source software platform for integrating, visualizing, and analyzing measurement data in the context of networks.

This protocol describes a network analysis workflow in Cytoscape for a set of differentially expressed genes. Points covered:

  • Retrieving relevant networks from public databases
  • Integration and visualization of experimental data
  • Network functional enrichment analysis
  • Exporting network visualizations
Differentially Expressed Genes Network Analysis Cytoscape is an open source software platform for integrating, visualizing, and analyzing measurement data in the context of networks. This protocol describes a network analysis workflow in Cytoscape for a set of differentially expressed genes. Points covered: Retrieving relevant networks from public databases Integration and visualization of experimental data Network functional enrichment analysis Exporting network visualizations