Saving Results

Cytoscape provides a number of ways to save results and visualizations:

  • As a session: File → Save, File → Save As...
  • As an image: File → Export → Network to Image...
  • To the web: File → Export → Network to Web Page... (Example)
  • To a public repository: File → Export → Network to NDEx, or File → Export → Collection to NDEx
  • As a graph format file: File → Export → Network to File.
    Formats:
    • CX JSON
    • Cytoscape.js JSON
    • GraphML
    • PSI-MI
    • XGMML
    • SIF