With the release of the 3.0.0, now is the time to start porting your 2.x plugins to 3.0 apps. Or to write new 3.0 apps. In the sections below, you'll find links to documentation and tutorials related to 3.0 app development.
Cytoscape Core projects are now hosted on GitHub. From now on, latest version of Cytoscape code should be obtained from the following git repositories:
Note that Cytoscape 3 is a multi-repository project. You need to read this document to learn how to clone all Cytoscape 3 projects.
Learn about the Architecture, Backward Compatibility, and API of Cytoscape 3.0.
Primary documentation for Cytoscape 3.0 app development.
All Cytoscape 3.0 app development tutorials.