Attention Developers: Cytoscape 3.0.0 has Released!

Port Your 2.x Plugins

With the release of the 3.0.0, now is the time to start porting your 2.x plugins to 3.0 apps. Or to write new 3.0 apps. In the sections below, you'll find links to documentation and tutorials related to 3.0 app development.

New Cytoscape Code Repository on GitHub

Cytoscape Core projects are now hosted on GitHub. From now on, latest version of Cytoscape code should be obtained from the following git repositories:

Note that Cytoscape 3 is a multi-repository project. You need to read this document to learn how to clone all Cytoscape 3 projects.

Documentation and Tutorials for App Developers

What is Cytoscape 3.0?

Learn about the Architecture, Backward Compatibility, and API of Cytoscape 3.0.

What are 3.0 Apps?

Primary documentation for Cytoscape 3.0 app development.

All Cytoscape 3.0 app development tutorials.

Code for App Developers

Cytoscape 3.0.0 Released! (2/14/2013)

Download Cytoscape 3.0.0 Release

Cytoscape 3.0.0 JavaDocs

API Jar 3.0.0

3.0.0 App Developer Project Tag