Package org.cytoscape.task

package org.cytoscape.task

This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.

Related Packages

Package	Description
org.cytoscape.task.analyze
org.cytoscape.task.create	This package provides a variety of task factory interfaces for creating new instances of network and other objects.
org.cytoscape.task.destroy	This package includes a set of task factory interfaces for deleting or or destroying objects within Cytoscape.
org.cytoscape.task.edit	This package include a set of task factory interfaces that allow the modification or editing of various objects within Cytoscape.
org.cytoscape.task.hide	This package includes a set of task factory interfaces showing and hiding nodes and edges within network views.
org.cytoscape.task.read	This package contains a set of task factory interfaces for reading various Cytoscape objects from files and URLs.
org.cytoscape.task.select	This package includes a set of task factory interfaces for selecting, de-selecting and inverting selections of nodes, edges, or combinations of both based on specific criteria.
org.cytoscape.task.visualize	This package include a set of task factory interfaces used to manipulate the visualizations of network views.
org.cytoscape.task.write	This package contains a set of task factory interfaces used for exporting or writing a variety of Cytoscape objects to files.

Class	Description
AbstractEdgeViewTask	The base class for all tasks that need to operate on an edge view and possibly its associated network view.
AbstractEdgeViewTaskFactory	An EdgeViewTaskFactory that is always ready to produce a TaskIterator.
AbstractNetworkCollectionTask	The base class for all tasks that need to operate on a Collection of CyNetworks.
AbstractNetworkCollectionTaskFactory	An NetworkCollectionTaskFactory that is always ready to produce a TaskIterator.
AbstractNetworkTask	Base class for all tasks that need to operate on a CyNetwork.
AbstractNetworkTaskFactory	A NetworkTaskFactory that is always ready to produce a TaskIterator.
AbstractNetworkViewCollectionTask	The base class for all tasks that need to operate on a Collection of CyNetworkViews.
AbstractNetworkViewCollectionTaskFactory	A NetworkViewCollectionTaskFactory that is always ready to produce a TaskIterator.
AbstractNetworkViewLocationTaskFactory	A base class for task factories that need to add a functionality to the network view considering a given location (for example adding a node where a mouse was clicked).
AbstractNetworkViewTask	The base class for all tasks that need to operate on a network view.
AbstractNetworkViewTaskFactory	A NetworkViewTaskFactory that is always ready to produce a TaskIterator.
AbstractNodeViewTask	The base class for all tasks that need to operate on a node view and possibly its associated network view.
AbstractNodeViewTaskFactory	A NodeViewTaskFactory that is always ready to produce a TaskIterator.
AbstractRootNetworkCollectionTask	The base class for all tasks that need to operate on a Collection of CyRootNetworks.
AbstractRootNetworkCollectionTaskFactory	A RootNetworkCollectionTaskFactory that is always ready to produce a TaskIterator.
AbstractRowTask	Base class for all tasks that need to operate on a CyRow.
AbstractTableCellTask	A base class for Tasks that need to operate on a single CyTable cell.
AbstractTableCellTaskFactory	A TableCellTaskFactory that is always ready to produce a TaskIterator.
AbstractTableColumnTask	A base class for Tasks that need to operate on an entire CyTable column.
AbstractTableColumnTaskFactory	A TableColumnTaskFactory that is always ready to produce a TaskIterator.
AbstractTableTask	A base class for Tasks that need to operate on an entire CyTable.
AbstractTableTaskFactory	A TableTaskFactory that is always ready to produce a TaskIterator.
DynamicTaskFactoryProvisioner	TODO: Missing documentation
EdgeViewTaskFactory	A task factory that creates one or more tasks that operate on the specified View<CyEdge> within the specified CyNetworkView.
NetworkCollectionTaskFactory	Produces a task iterator for the specified collection of networks.
NetworkTaskFactory	A task factory that creates one or more tasks that operate on the specified CyNetwork.
NetworkViewCollectionTaskFactory	A task factory that creates one or more tasks that operate on the specified collection of network views.
NetworkViewLocationTaskFactory	An extension of TaskFactory that provides support for tasks that need to know the a location within a CyNetworkView to perform their task.
NetworkViewTaskFactory	A task factory that creates one or more tasks that operate on the specified CyNetworkView.
NodeViewTaskFactory	A task factory that creates a task that operates on the specified View<CyNode> within the specified CyNetworkView.
RootNetworkCollectionTaskFactory	Produces a task iterator for the specified collection of root-networks.
RowTaskFactory	A task factory that creates one or more tasks that operate on the specified CyRow.
TableCellTaskFactory	A task factory that creates one or more tasks that operate on the specified CyColumn along with primary key.
TableColumnTaskFactory	A task factory that creates one or more tasks that operate on the specified CyColumn.
TableTaskFactory	A task factory that creates one or more tasks that operate on the specified CyTable.