Package org.cytoscape.command.util

Class NodeList

java.lang.Object
org.cytoscape.command.util.NodeList
public class NodeList extends Object
This class implements a wrapper for a List of CyNodes that can be used by the Tunables mechanism. Currently, it is only implemented by command tunables so it will be ignored in GUI (Swing) contexts. A typical use might look like: 
 @Tunable(description="Network", context="nogui", gravity=1.0)
 CyNetwork network;

 public NodeList nodeList = new NodeList(null);
 
 @Tunable(description="Nodes to select", context="nogui", gravity=2.0)
 public NodeList getnodeList() {
        nodeList.setNetwork(network); // Should check for null
        return nodeList;
 }
 
 public void setnodeList(NodeList setValue) {}

Cytoscape Backwards Compatibility (Final Class): This class is final and therefore can't be extended by users. This means that we may add methods for minor version updates. Methods will only be removed for major version updates.

Module: command-executor-api

To use this in your app, include the following dependency in your POM:

<dependency>
    <groupId>org.cytoscape</groupId>
    <artifactId>command-executor-api</artifactId>
</dependency>

  • Constructor Details

    • NodeList

      public NodeList()
      Create a new NodeList object with no initial network

    • NodeList

      public NodeList​(CyNetwork targetNetwork)
      Create a new NodeList object with an initial network
      Parameters:
      targetNetwork - the network this nodelist will be in

  • Method Details

    • setNetwork

      public void setNetwork​(CyNetwork network)
      Set the network for this nodelist
      Parameters:
      network - the network for this nodelist

    • getNetwork

      public CyNetwork getNetwork()
      Get the network for this nodelist
      Returns:
      the network we're looking through

    • setValue

      public void setValue​(List<CyNode> nodeList)
      Set the list of nodes
      Parameters:
      nodeList - the list of nodes

    • getValue

      public List<CyNode> getValue()
      Get the list of nodes
      Returns:
      the list of nodes