Package org.cytoscape.io.read

Interface CyNetworkReader

All Superinterfaces:
Task
All Known Implementing Classes:
AbstractCyNetworkReader
public interface CyNetworkReader extends Task
An extension of the Task interface that returns an array of CyNetwork objects that are read as part of the Task. An additional method provides an option for readers to create CyNetworkViews from the networks it has read as well. Instances of this interface are created by InputStreamTaskFactory objects registered as OSGi services, which are in turn processed by associated reader manager objects that distinguish InputStreamTaskFactories based on the DataCategory associated with the CyFileFilter.

Cytoscape Backwards Compatibility (SPI Interface): We expect that this interface will be implemented. Therefore to maintain backwards compatibility this interface will only be modified for major version updates.

Module: io-api

To use this in your app, include the following dependency in your POM:

<dependency>
    <groupId>org.cytoscape</groupId>
    <artifactId>io-api</artifactId>
</dependency>

  • Method Details

    • getNetworks

      CyNetwork[] getNetworks()
      Returns an array of networks read after executing the run() method of Task.
      Returns:
      an array of networks read after executing the run() method of Task.

    • buildCyNetworkView

      CyNetworkView buildCyNetworkView​(CyNetwork network)
      A method to build a CyNetworkView from one of the networks just read.
      Parameters:
      network - A network just read by the task and part of the getCyNetworks() array.
      Returns:
      A CyNetworkView created by the reader for the network specified.