Uses of Interface
org.cytoscape.model.subnetwork.CyRootNetwork
Package
Description
This package provides an API for creating and managing
groups in Cytoscape.
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
This package contains rootnetwork and subnetwork extensions to the
CyNetwork interface that provide a more complex meta-network
data model.
This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
This package include a set of task factory interfaces that allow
the modification or editing of various objects within Cytoscape.
This package contains a set of task factory interfaces for reading
various Cytoscape objects from files and URLs.
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Uses of CyRootNetwork in org.cytoscape.group
Modifier and TypeMethodDescriptionCyGroup.getRootNetwork()
Return the root network for this group. -
Uses of CyRootNetwork in org.cytoscape.io.read
Modifier and TypeMethodDescriptionprotected CyRootNetwork
AbstractCyNetworkReader.getRootNetwork()
Get target network collection, i.e., parent root network for all networks to be loaded. -
Uses of CyRootNetwork in org.cytoscape.model.subnetwork
Modifier and TypeMethodDescriptionCyRootNetworkManager.getRootNetwork(CyNetwork n)
Converts a CyNetwork to a CyRootNetworkCySubNetwork.getRootNetwork()
Return theCyRootNetwork
that contains this CySubNetwork. -
Uses of CyRootNetwork in org.cytoscape.task
Modifier and TypeFieldDescriptionprotected Collection<CyRootNetwork>
AbstractRootNetworkCollectionTask.networks
The collection of root-networks that subclasses will operate on.Modifier and TypeMethodDescriptionRootNetworkCollectionTaskFactory.createTaskIterator(Collection<CyRootNetwork> networks)
Provisions this factory with the collection of root-networks that will be passed into any task created by it.default boolean
RootNetworkCollectionTaskFactory.isOn(Collection<CyRootNetwork> networks)
If this task factory implements theTogglable
interface then this method determines if the button or check box is on or off.boolean
AbstractRootNetworkCollectionTaskFactory.isReady(Collection<CyRootNetwork> networks)
Returns true if the supplied collection of root-networks is not null or empty.boolean
RootNetworkCollectionTaskFactory.isReady(Collection<CyRootNetwork> networks)
Returns true if this task factory is ready to produce a task iterator.ModifierConstructorDescriptionAbstractRootNetworkCollectionTask(Collection<CyRootNetwork> networks)
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Uses of CyRootNetwork in org.cytoscape.task.edit
Modifier and TypeMethodDescriptionImportDataTableTaskFactory.createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, boolean loadToUnassignedTable, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)
Creates a task iterator for importing a table data in a network data table.JoinTablesTaskTaskFactory.createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)
MergeTablesTaskFactory.createTaskIterator(CyTable sourceTable, CyTable targetTable, List<String> sourceColumnsList, String sourceKeyColumn, boolean mergeColumnVirtual, boolean mapToNetworks, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)
Creates a task iterator for merging two data tables. -
Uses of CyRootNetwork in org.cytoscape.task.read
Modifier and TypeMethodDescriptionLoadMultipleNetworkFilesTaskFactory.createTaskIterator(List<File> files, CyRootNetwork rootNetwork)
Creates a task iterator for loading one or more networks from supported files (e.g.