The R markdown is available from the pulldown menu for Code
at the upper-right, choose “Download Rmd”, or download
the Rmd from GitHub.
Why use Jupyter Bridge
Users do not need to worry about dependencies and environment.
Easily share notebook-based workflows and data sets
Workflows can reside in the cloud, access cloud resources, and yet
still use Cytoscape features.
How Jupyter Bridge works
Jupyter-Bridge enables a workflow running on remote Jupyter to
execute functions on a PC-local Cytoscape – the remote Jupyter runs the
request through Jupyter-Bridge, where it is picked up by Javascript code
running on the Jupyter web page in the PC-local browser, which in turn
calls Cytoscape. The Cytoscape response travels the reverse route.