Uses of Interface
org.cytoscape.model.subnetwork.CyRootNetwork
Packages that use CyRootNetwork
Package
Description
This package provides an API for creating and managing
groups in Cytoscape.
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
This package contains rootnetwork and subnetwork extensions to the
CyNetwork interface that provide a more complex meta-network
data model.
This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
This package include a set of task factory interfaces that allow
the modification or editing of various objects within Cytoscape.
This package contains a set of task factory interfaces for reading
various Cytoscape objects from files and URLs.
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Uses of CyRootNetwork in org.cytoscape.group
Methods in org.cytoscape.group that return CyRootNetworkModifier and TypeMethodDescriptionCyGroup.getRootNetwork()
Return the root network for this group. -
Uses of CyRootNetwork in org.cytoscape.io.read
Methods in org.cytoscape.io.read that return CyRootNetworkModifier and TypeMethodDescriptionprotected final CyRootNetwork
AbstractCyNetworkReader.getRootNetwork()
Get target network collection, i.e., parent root network for all networks to be loaded. -
Uses of CyRootNetwork in org.cytoscape.model.subnetwork
Methods in org.cytoscape.model.subnetwork that return CyRootNetworkModifier and TypeMethodDescriptionCyRootNetworkManager.getRootNetwork
(CyNetwork n) Converts a CyNetwork to a CyRootNetworkCySubNetwork.getRootNetwork()
Return theCyRootNetwork
that contains this CySubNetwork. -
Uses of CyRootNetwork in org.cytoscape.task
Fields in org.cytoscape.task with type parameters of type CyRootNetworkModifier and TypeFieldDescriptionprotected final Collection<CyRootNetwork>
AbstractRootNetworkCollectionTask.networks
The collection of root-networks that subclasses will operate on.Method parameters in org.cytoscape.task with type arguments of type CyRootNetworkModifier and TypeMethodDescriptionRootNetworkCollectionTaskFactory.createTaskIterator
(Collection<CyRootNetwork> networks) Provisions this factory with the collection of root-networks that will be passed into any task created by it.default boolean
RootNetworkCollectionTaskFactory.isOn
(Collection<CyRootNetwork> networks) If this task factory implements theTogglable
interface then this method determines if the button or check box is on or off.boolean
AbstractRootNetworkCollectionTaskFactory.isReady
(Collection<CyRootNetwork> networks) Returns true if the supplied collection of root-networks is not null or empty.boolean
RootNetworkCollectionTaskFactory.isReady
(Collection<CyRootNetwork> networks) Returns true if this task factory is ready to produce a task iterator.Constructor parameters in org.cytoscape.task with type arguments of type CyRootNetworkModifierConstructorDescription -
Uses of CyRootNetwork in org.cytoscape.task.edit
Methods in org.cytoscape.task.edit with parameters of type CyRootNetworkModifier and TypeMethodDescriptionImportDataTableTaskFactory.createTaskIterator
(CyTable globalTable, boolean selectedNetworksOnly, boolean loadToUnassignedTable, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) Creates a task iterator for importing a table data in a network data table.JoinTablesTaskTaskFactory.createTaskIterator
(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) MergeTablesTaskFactory.createTaskIterator
(CyTable sourceTable, CyTable targetTable, List<String> sourceColumnsList, String sourceKeyColumn, boolean mergeColumnVirtual, boolean mapToNetworks, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) Creates a task iterator for merging two data tables. -
Uses of CyRootNetwork in org.cytoscape.task.read
Methods in org.cytoscape.task.read with parameters of type CyRootNetworkModifier and TypeMethodDescriptionLoadMultipleNetworkFilesTaskFactory.createTaskIterator
(List<File> files, CyRootNetwork rootNetwork) Creates a task iterator for loading one or more networks from supported files (e.g.