Package | Description |
---|---|
org.cytoscape.io.read |
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
|
org.cytoscape.io.write |
This package provides factory interfaces to be used by anyone wishing to provide
export or writing capabilities to the rest of Cytoscape.
|
org.cytoscape.jobs |
This package provides a mechanism for executing remote jobs from within Cytoscape.
|
org.cytoscape.session |
This package contains the interfaces and classes necessary to capturing,
storing, and retrieving the state of a Cytoscape session.
|
org.cytoscape.session.events |
This package contains the interfaces and classes necessary to capturing,
session change events.
|
Modifier and Type | Method and Description |
---|---|
CySession |
CySessionReader.getSession()
Returns a
CySession object |
Modifier and Type | Method and Description |
---|---|
CyWriter |
CySessionWriterFactory.createWriter(OutputStream os,
CySession session)
Creates a single Task that will write the specified
CySession object to the
specified OutputStream. |
CyWriter |
CySessionWriterManager.getWriter(CySession session,
CyFileFilter filter,
File file)
Returns the
CyWriter Task that will attempt to write the specified session to the
specified file of the specified file type. |
CyWriter |
CySessionWriterManager.getWriter(CySession session,
CyFileFilter filter,
OutputStream os)
Returns the
CyWriter Task that will attempt to write the specified session to the
specified output stream of the specified file type. |
Modifier and Type | Method and Description |
---|---|
CyJob |
CyJobExecutionService.restoreJobFromSession(CySession session,
File sessionFile)
This is method is called by the
CyJobManager to restore
the job and reestablish the job with the
remote service. |
Modifier and Type | Method and Description |
---|---|
CySession |
CySession.Builder.build()
Returns a complete instance of CySession based upon the methods called on this instance of Builder.
|
CySession |
CySessionManager.getCurrentSession()
This method returns a
CySession object describing the current
state of Cytoscape. |
Modifier and Type | Method and Description |
---|---|
void |
CySessionManager.setCurrentSession(CySession session,
String fileName)
This method allows a new session to be set and in doing
so erases and overrides the current session!
|
Modifier and Type | Method and Description |
---|---|
CySession |
SessionLoadedEvent.getLoadedSession()
Returns the session that was just loaded.
|
CySession |
SessionSavedEvent.getSavedSession()
Returns the session that was just loaded.
|
Constructor and Description |
---|
SessionLoadedEvent(CySessionManager source,
CySession session,
String fileName) |
SessionSavedEvent(Object source,
CySession session,
String fileName) |
Copyright 2011-2015 Cytoscape Consortium. All rights reserved.