Uses of Class
org.cytoscape.work.TaskIterator

Packages that use TaskIterator

Package	Description
org.cytoscape.command	Interface to support execution of tasks as commands, including the ability to get a list of namespaces, commands, and arguments, and then execute those commands with a set of arguments.
org.cytoscape.io.read	Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
org.cytoscape.io.webservice	Interfaces for SOAP/REST web service clients, web services that return results as networks or tables, or query results.
org.cytoscape.task	This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
org.cytoscape.task.create	This package provides a variety of task factory interfaces for creating new instances of network and other objects.
org.cytoscape.task.edit	This package include a set of task factory interfaces that allow the modification or editing of various objects within Cytoscape.
org.cytoscape.task.read	This package contains a set of task factory interfaces for reading various Cytoscape objects from files and URLs.
org.cytoscape.task.select	This package includes a set of task factory interfaces for selecting, de-selecting and inverting selections of nodes, edges, or combinations of both based on specific criteria.
org.cytoscape.task.write	This package contains a set of task factory interfaces used for exporting or writing a variety of Cytoscape objects to files.
org.cytoscape.view.layout	This package provides access to the available layout algorithms, as well as provides abstract layout classes and layout information containers for the convenience of implementing other layout algorithms.
org.cytoscape.work	This package defines the task framework, where tasks are units of work.

Uses of TaskIterator in org.cytoscape.command

Methods in org.cytoscape.command that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	CommandExecutorTaskFactory.createTaskIterator(File commandFile, TaskObserver observer) Creates a task iterator that will execute the specified commands.
TaskIterator	CommandExecutorTaskFactory.createTaskIterator(List<String> commands, TaskObserver observer) Creates a task iterator that will execute the specified commands.
TaskIterator	CommandExecutorTaskFactory.createTaskIterator(String namespace, String command, Map<String,Object> args, TaskObserver observer) Creates a task iterator that will execute the specified command.
TaskIterator	CommandExecutorTaskFactory.createTaskIterator(TaskObserver observer, String... commands) Creates a task iterator that will execute the specified commands.

Uses of TaskIterator in org.cytoscape.io.read

Methods in org.cytoscape.io.read that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	InputStreamTaskFactory.createTaskIterator(InputStream is, String inputName) Sets the input stream that will be read by the Reader created from this factory.

Uses of TaskIterator in org.cytoscape.io.webservice

Methods in org.cytoscape.io.webservice that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	WebServiceClient.createTaskIterator(Object query) Set query for the tasks to be executed.

Uses of TaskIterator in org.cytoscape.task

Methods in org.cytoscape.task that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	NetworkCollectionTaskFactory.createTaskIterator(Collection<CyNetwork> networks) Provisions this factory with the collection of networks that will be passed into any task created by it.
TaskIterator	NetworkViewCollectionTaskFactory.createTaskIterator(Collection<CyNetworkView> networkViews) Provisions this factory with the collection of network views that will be passed into any task created by it.
TaskIterator	TableColumnTaskFactory.createTaskIterator(CyColumn column) Used to provision this factory with a CyColumn that will be used to create tasks.
TaskIterator	TableCellTaskFactory.createTaskIterator(CyColumn column, Object primaryKeyValue) Used to provision this factory with a CyColumn and a primary key that will be used to create tasks.
TaskIterator	NetworkTaskFactory.createTaskIterator(CyNetwork network) Provisions this factory with the CyNetwork that will be passed into any task created by it.
TaskIterator	NetworkViewTaskFactory.createTaskIterator(CyNetworkView networkView) Creates a new TaskIterator using the given CyNetworkView
TaskIterator	NetworkViewLocationTaskFactory.createTaskIterator(CyNetworkView networkView, Point2D javaPt, Point2D xformPt) Creates a task iterator using the specified network view and points.
TaskIterator	RowTaskFactory.createTaskIterator(CyRow row) Provisions this factory with the CyRow that will be passed into any task created by it.
TaskIterator	TableTaskFactory.createTaskIterator(CyTable table) Used to provision this factory with a CyTable that will be used to create tasks.
TaskIterator	EdgeViewTaskFactory.createTaskIterator(View<CyEdge> edgeView, CyNetworkView networkView) Creates a new TaskIterator using the given edge view and network view.
TaskIterator	NodeViewTaskFactory.createTaskIterator(View<CyNode> nodeView, CyNetworkView networkView) Provisions this factory with the node view and its associated network view, both of which will be passed into any task that will be created by this factory.

Uses of TaskIterator in org.cytoscape.task.create

Methods in org.cytoscape.task.create that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	NewSessionTaskFactory.createTaskIterator(boolean destroyCurrentSession) Creates a task iterator for creating a new session and destroying the current session based on the input.
TaskIterator	CreateNetworkViewTaskFactory.createTaskIterator(Collection<CyNetwork> networks, CyNetworkViewFactory factory) Use this method to create a network view for each of the passed networks.
TaskIterator	NewNetworkSelectedNodesOnlyTaskFactory.createTaskIterator(CyNetwork network) Returns a TaskIterator that creates a new network from the selected nodes in the given network.
TaskIterator	NewNetworkSelectedNodesAndEdgesTaskFactory.createTaskIterator(CyNetwork network) Returns a TaskIterator that creates a new network from the selected nodes and edges in the given network.
TaskIterator	CloneNetworkTaskFactory.createTaskIterator(CyNetwork network) Returns a TaskIterator that clones the given network.

Uses of TaskIterator in org.cytoscape.task.edit

Methods in org.cytoscape.task.edit that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	RenameColumnTaskFactory.createTaskIterator(CyColumn column, String newColumnName) Create a task iterator for renaming a selected column.
TaskIterator	EditNetworkTitleTaskFactory.createTaskIterator(CyNetwork network, String title) Creates a task iterator for editing a network's title.
TaskIterator	ImportDataTableTaskFactory.createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, boolean loadToUnassignedTable, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) Creates a task iterator for importing a table data in a network data table.
TaskIterator	MapTableToNetworkTablesTaskFactory.createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, Class<? extends CyIdentifiable> tableType)
TaskIterator	JoinTablesTaskTaskFactory.createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)
TaskIterator	MapGlobalToLocalTableTaskFactory.createTaskIterator(CyTable globalTable, Collection<CyTable> localTables) Creates a task iterator for mapping a selected global table to a selected local table.
TaskIterator	MergeTablesTaskFactory.createTaskIterator(CyTable sourceTable, CyTable targetTable, List<String> sourceColumnsList, String sourceKeyColumn, boolean mergeColumnVirtual, boolean mapToNetworks, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) Creates a task iterator for merging two data tables.
TaskIterator	ImportDataTableTaskFactory.createTaskIterator(CyTableReader reader) Creates a task iterator for importing a table data in a network data table.

Uses of TaskIterator in org.cytoscape.task.read

Methods in org.cytoscape.task.read that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	OpenSessionTaskFactory.createTaskIterator(File file) Creates a task iterator for loading a session from a file.
TaskIterator	LoadVizmapFileTaskFactory.createTaskIterator(File file) Creates a task iterator for loading files into visual styles.
TaskIterator	LoadTableFileTaskFactory.createTaskIterator(File file) Creates the task iterator for importing an attribute file to a table.
TaskIterator	LoadNetworkFileTaskFactory.createTaskIterator(File file) Creates a task iterator for loading a network from a file.
TaskIterator	OpenSessionTaskFactory.createTaskIterator(File file, boolean confirm) Creates a task iterator for loading a session from a file, with an option to let the user confirm it before disposing the current session if it is not empty.
TaskIterator	LoadVizmapFileTaskFactory.createTaskIterator(File file, TaskObserver observer) Creates a task iterator for loading files into visual styles.
TaskIterator	LoadNetworkFileTaskFactory.createTaskIterator(File file, TaskObserver observer) Creates a task iterator for loading a network from a file.
TaskIterator	LoadMultipleNetworkFilesTaskFactory.createTaskIterator(List<File> files, CyRootNetwork rootNetwork) Creates a task iterator for loading one or more networks from supported files (e.g.
TaskIterator	LoadTableURLTaskFactory.createTaskIterator(URL url) Creates the task iterator for importing an attribute file to a table.
TaskIterator	LoadNetworkURLTaskFactory.createTaskIterator(URL url, TaskObserver observer) Creates a task iterator for loading a URL into a network.
TaskIterator	LoadNetworkURLTaskFactory.loadCyNetworks(URL url) Creates a task iterator for loading a URL into a network.

Uses of TaskIterator in org.cytoscape.task.select

Methods in org.cytoscape.task.select that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	SelectFromFileListTaskFactory.createTaskIterator(CyNetwork network, File file) Creates a task iterator for selecting items of a network based on a file.

Uses of TaskIterator in org.cytoscape.task.write

Methods in org.cytoscape.task.write that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	ExportNetworkTaskFactory.createTaskIterator(CyNetwork network, File file) Creates the task iterator for exporting networks.
TaskIterator	ExportNetworkViewTaskFactory.createTaskIterator(CyNetworkView view, File file) Creates the task iterator for exporting network views.
TaskIterator	ExportTableTaskFactory.createTaskIterator(CyTable table, File file) Returns a task factory that write the specified table to the specified file.
TaskIterator	SaveSessionAsTaskFactory.createTaskIterator(File file) Creates a task iterator for saving the session in a specified file.
TaskIterator	ExportVizmapTaskFactory.createTaskIterator(File file) Creates a task iterator for exporting the vizmap file.
TaskIterator	ExportSelectedNetworkTaskFactory.createTaskIterator(File file) Creates the task iterator for exporting the selected network.

Uses of TaskIterator in org.cytoscape.view.layout

Methods in org.cytoscape.view.layout that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	CyLayoutAlgorithm.createTaskIterator(CyNetworkView networkView, Object layoutContext, Set<View<CyNode>> nodesToLayOut, String layoutAttribute) Creates a task iterator containing the layout tasks.

Uses of TaskIterator in org.cytoscape.work

Methods in org.cytoscape.work that return TaskIterator

Modifier and Type	Method and Description
TaskIterator	TaskFactory.createTaskIterator() Returns an iterator containing a sequence of Tasks.
TaskIterator	TunableSetter.createTaskIterator(TaskIterator taskIterator, Map<String,Object> tunableValues) This method takes as input a TaskIterator and a map of tunable names to tunable values and applies those values to any tunables found in the Tasks found in the TaskIterator.
TaskIterator	TunableSetter.createTaskIterator(TaskIterator taskIterator, Map<String,Object> tunableValues, TaskObserver observer) This version of createTaskIterator adds a TaskObserver argument.
TaskIterator	AbstractTask.getTaskIterator()

Methods in org.cytoscape.work with parameters of type TaskIterator

Modifier and Type	Method and Description
void	TaskIterator.append(TaskIterator taskIterator) Adds the tasks in the given TaskIterator to the end of this iterator.
TaskIterator	TunableSetter.createTaskIterator(TaskIterator taskIterator, Map<String,Object> tunableValues) This method takes as input a TaskIterator and a map of tunable names to tunable values and applies those values to any tunables found in the Tasks found in the TaskIterator.
TaskIterator	TunableSetter.createTaskIterator(TaskIterator taskIterator, Map<String,Object> tunableValues, TaskObserver observer) This version of createTaskIterator adds a TaskObserver argument.
void	TaskManager.execute(TaskIterator iterator) This method is called to execute the Tasks in a TaskIterator provided by a TaskFactory.
void	TaskManager.execute(TaskIterator iterator, TaskObserver observer) This method is called to execute the Tasks in a TaskIterator provided by a TaskFactory.
void	TaskIterator.insertTasksAfter(Task referenceTask, TaskIterator newTasks) Inserts "newTasks" immediately after "referenceTask".
protected void	AbstractTask.insertTasksAfterCurrentTask(TaskIterator newTasks) Inserts "newTasks" after the current Task, in the TaskIterator that is being managed by this class.
void	AbstractTask.setTaskIterator(TaskIterator taskIterator) This method is used by a TaskIterator to set itself on the newly added Task.