Package | Description |
---|---|
org.cytoscape.app |
This is the Cytoscape App API, which supports development of Cytoscape 3.X
apps in a manner similar to apps developed in Cytoscape 2.X.
|
org.cytoscape.application.events |
This package provides application events/listeners, including
Cytoscape startup/shutdown, setCurrentNetwork/setCurrentNetworkView/
setSelectedNetwork.
|
org.cytoscape.application.swing |
This package defines the various interfaces, abstract classes, and enums
that represent the Cytoscape Swing Application API.
|
org.cytoscape.io.read |
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
|
Modifier and Type | Method and Description |
---|---|
CyApplicationManager |
CyAppAdapter.getCyApplicationManager()
Deprecated.
Returns an instance of
CyApplicationManager . |
Constructor and Description |
---|
SetCurrentNetworkEvent(CyApplicationManager source,
CyNetwork net)
Constructor.
|
SetCurrentNetworkViewEvent(CyApplicationManager source,
CyNetworkView view)
Constructor.
|
SetCurrentRenderingEngineEvent(CyApplicationManager source,
RenderingEngine<CyNetwork> engine)
Constructor.
|
SetSelectedNetworksEvent(CyApplicationManager source,
List<CyNetwork> networks)
Constructor.
|
SetSelectedNetworkViewsEvent(CyApplicationManager source,
List<CyNetworkView> views)
Constructor.
|
Constructor and Description |
---|
AbstractCyAction(Map<String,String> configProps,
CyApplicationManager applicationManager,
CyNetworkViewManager networkViewManager)
Creates a new AbstractCyAction object.
|
AbstractCyAction(Map<String,String> configProps,
CyApplicationManager applicationManager,
CyNetworkViewManager networkViewManager,
TaskFactory factory)
Creates a new AbstractCyAction object.
|
AbstractCyAction(String name,
CyApplicationManager applicationManager,
String enableFor,
CyNetworkViewManager networkViewManager)
Creates a new AbstractCyAction object that is enabled for the
specific "enableFor" state.
|
ActionEnableSupport(Action action,
String enableFor,
CyApplicationManager applicationManager,
CyNetworkViewManager networkViewManager)
Constructor.
|
ActionEnableSupport(DynamicSubmenuListener submenuListener,
String enableFor,
CyApplicationManager applicationManager,
CyNetworkViewManager networkViewManager)
Constructor.
|
ActionEnableSupport(JMenuItem menuItem,
String enableFor,
CyApplicationManager applicationManager,
CyNetworkViewManager networkViewManager)
Constructor.
|
Modifier and Type | Field and Description |
---|---|
protected CyApplicationManager |
AbstractCyNetworkReader.cyApplicationManager |
Constructor and Description |
---|
AbstractCyNetworkReader(InputStream inputStream,
CyApplicationManager cyApplicationManager,
CyNetworkFactory cyNetworkFactory,
CyNetworkManager cyNetworkManager,
CyRootNetworkManager cyRootNetworkManager) |
Copyright 2011-2015 Cytoscape Consortium. All rights reserved.