Uses of Interface
org.cytoscape.model.CyColumn

Packages that use CyColumn

Package	Description
org.cytoscape.application.swing	This package defines the various interfaces, abstract classes, and enums that represent the Cytoscape Swing Application API.
org.cytoscape.group	This package provides an API for creating and managing groups in Cytoscape.
org.cytoscape.group.data	An api for configuring CyGroups.
org.cytoscape.model	This package has the core interfaces of network and table data structures that are foundational to Cytoscape.
org.cytoscape.task	This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
org.cytoscape.task.edit	This package include a set of task factory interfaces that allow the modification or editing of various objects within Cytoscape.
org.cytoscape.util.json

Uses of CyColumn in org.cytoscape.application.swing

Methods in org.cytoscape.application.swing that return CyColumn

Modifier and Type	Method and Description
CyColumn	CyColumnComboBox.getSelectedItem() Override getSelectedItem() and use covariant return type to change return type to CyColumn.

Method parameters in org.cytoscape.application.swing with type arguments of type CyColumn

Modifier and Type	Method and Description
void	CyColumnSelector.update(Collection<CyColumn> columns, Collection<String> selectedColumnNames) Updates the control to display the given CyColumn objects.

Constructor parameters in org.cytoscape.application.swing with type arguments of type CyColumn

Constructor and Description
CyColumnComboBox(CyColumnPresentationManager columnPresentationManager, Collection<CyColumn> columns) Creates a CyColumnComboBox with all entries enabled.
CyColumnComboBox(CyColumnPresentationManager columnPresentationManager, Collection<CyColumn> columns, Predicate<CyColumn> enabledPredicate) Creates a CyColumnComboBox.
CyColumnComboBox(CyColumnPresentationManager columnPresentationManager, Collection<CyColumn> columns, Predicate<CyColumn> enabledPredicate) Creates a CyColumnComboBox.

Uses of CyColumn in org.cytoscape.group

Methods in org.cytoscape.group with parameters of type CyColumn

Modifier and Type	Method and Description
Aggregator<?>	CyGroupSettingsManager.getAggregator(CyGroup group, CyColumn column) Get the Aggregator that will be used to aggregate the values in a specific CyColumn for all of the nodes in a group onto the corresponding column in the group node.
Aggregator<?>	CyGroupSettingsManager.getOverrideAggregation(CyColumn column) Get the override aggregation setting for a column (if any).
Aggregator<?>	CyGroupSettingsManager.getOverrideAggregation(CyGroup group, CyColumn column) Get the override aggregation setting for a column (if any) in a specific group.
void	CyGroupSettingsManager.setOverrideAggregation(CyColumn column, Aggregator<?> agg) set the override aggregation setting for a column (if any).
void	CyGroupSettingsManager.setOverrideAggregation(CyGroup group, CyColumn column, Aggregator<?> agg) set the override aggregation setting for a column in a group (if any).

Uses of CyColumn in org.cytoscape.group.data

Methods in org.cytoscape.group.data with parameters of type CyColumn

Modifier and Type	Method and Description
<T> T	Aggregator.aggregate(CyTable table, CyGroup group, CyColumn column) Aggregate the column for the members of the specified group into the group.

Uses of CyColumn in org.cytoscape.model

Methods in org.cytoscape.model that return CyColumn

Modifier and Type	Method and Description
CyColumn	CyTable.getColumn(String fullyQualifiedName) Returns the column with the specified fully-qualified name.
default CyColumn	CyTable.getColumn(String namespace, String name) Returns the column for the specified name in the specified namespace.
CyColumn	CyTable.getPrimaryKey() Returns the column type of the primary key for this table.

Methods in org.cytoscape.model that return types with arguments of type CyColumn

Modifier and Type	Method and Description
Collection<CyColumn>	CyTable.getColumns() Returns the column types for all columns in this table.
default Collection<CyColumn>	CyTable.getColumns(String namespace) Returns the column types for all columns in this table in the given namespace.

Uses of CyColumn in org.cytoscape.task

Fields in org.cytoscape.task declared as CyColumn

Modifier and Type	Field and Description
protected CyColumn	AbstractTableColumnTask.column The CyColumn that descendants will operate on.
protected CyColumn	AbstractTableCellTask.column The CyColumn of the CyTable cell

Methods in org.cytoscape.task with parameters of type CyColumn

Modifier and Type	Method and Description
TaskIterator	TableColumnTaskFactory.createTaskIterator(CyColumn column) Used to provision this factory with a CyColumn that will be used to create tasks.
TaskIterator	TableCellTaskFactory.createTaskIterator(CyColumn column, Object primaryKeyValue) Used to provision this factory with a CyColumn and a primary key that will be used to create tasks.
boolean	TableColumnTaskFactory.isReady(CyColumn column) Returns true if this task factory is ready to produce a TaskIterator.
boolean	AbstractTableColumnTaskFactory.isReady(CyColumn column) Returns true if the supplied column is not null.
boolean	TableCellTaskFactory.isReady(CyColumn column, Object primaryKeyValue) Returns true if this task factory is ready to produce a TaskIterator.
boolean	AbstractTableCellTaskFactory.isReady(CyColumn column, Object primaryKeyValue) Returns true if the supplied column and value are not null.

Constructors in org.cytoscape.task with parameters of type CyColumn

Constructor and Description
AbstractTableCellTask(CyColumn column, Object primaryKeyValue) Initializes a Task that needs to operate on a CyTable cell entry.
AbstractTableColumnTask(CyColumn column) Initializes a Task that needs to operate on a CyTable column.

Uses of CyColumn in org.cytoscape.task.edit

Methods in org.cytoscape.task.edit with parameters of type CyColumn

Modifier and Type	Method and Description
TaskIterator	RenameColumnTaskFactory.createTaskIterator(CyColumn column, String newColumnName) Create a task iterator for renaming a selected column.
TaskIterator	ImportDataTableTaskFactory.createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, boolean loadToUnassignedTable, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) Creates a task iterator for importing a table data in a network data table.
TaskIterator	JoinTablesTaskTaskFactory.createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)
TaskIterator	MergeTablesTaskFactory.createTaskIterator(CyTable sourceTable, CyTable targetTable, List<String> sourceColumnsList, String sourceKeyColumn, boolean mergeColumnVirtual, boolean mapToNetworks, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) Creates a task iterator for merging two data tables.

Uses of CyColumn in org.cytoscape.util.json

Methods in org.cytoscape.util.json with parameters of type CyColumn

Modifier and Type	Method and Description
String	CyJSONUtil.toJson(CyColumn cyColumn, boolean includeDefinition, boolean includeValues) Returns a JSON representation of CyColumn.
String	CyJSONUtil.toJson(CyNetwork network, CyEdge cyEdge, CyColumn... columns) Returns a JSON representation of a single CyEdge and its relevant data.
String	CyJSONUtil.toJson(CyNetwork network, CyNode cyNode, CyColumn... columns) Returns a JSON representation of a single CyNode and its relevant data.
String	CyJSONUtil.toJson(CyRow cyRow, CyColumn... columns) Returns a JSON representation of a table row.

Method parameters in org.cytoscape.util.json with type arguments of type CyColumn

Modifier and Type	Method and Description
String	CyJSONUtil.cyColumnsToJson(Collection<CyColumn> collection) Returns a list of references (via column name) for a collection of CyColumn.