Package | Description |
---|---|
org.cytoscape.app |
This is the Cytoscape App API, which supports development of Cytoscape 3.X
apps in a manner similar to apps developed in Cytoscape 2.X.
|
org.cytoscape.application |
This package provides Cytoscape version number, application-wide setting,
basic access to current network, selected networks, views and rendering engines.
|
org.cytoscape.io.read |
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
|
org.cytoscape.task.create |
This package provides a variety of task factory interfaces for creating
new instances of network and other objects.
|
Modifier and Type | Method and Description |
---|---|
CyNetworkViewFactory |
CyAppAdapter.getCyNetworkViewFactory()
Deprecated.
Returns an instance of
CyNetworkViewFactory . |
Modifier and Type | Method and Description |
---|---|
CyNetworkViewFactory |
NetworkViewRenderer.getNetworkViewFactory() |
Modifier and Type | Field and Description |
---|---|
protected CyNetworkViewFactory |
AbstractCyNetworkReader.cyNetworkViewFactory
Will be used for creating network views.
|
Modifier and Type | Method and Description |
---|---|
protected CyNetworkViewFactory |
AbstractCyNetworkReader.getNetworkViewFactory() |
Constructor and Description |
---|
AbstractCyNetworkReader(InputStream inputStream,
CyNetworkViewFactory cyNetworkViewFactory,
CyNetworkFactory cyNetworkFactory,
CyNetworkManager cyNetworkManager,
CyRootNetworkManager cyRootNetworkManager) |
Modifier and Type | Method and Description |
---|---|
TaskIterator |
CreateNetworkViewTaskFactory.createTaskIterator(Collection<CyNetwork> networks,
CyNetworkViewFactory factory)
Use this method to create a network view for each of the passed networks.
|
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