Uses of Interface
org.cytoscape.model.CyColumn
Package
Description
This package defines the various interfaces, abstract classes, and enums
that represent the Cytoscape Swing Application API.
This package provides an API for creating and managing
groups in Cytoscape.
An api for configuring
CyGroup
s.This package has the core interfaces of network and
table data structures that are foundational to Cytoscape.
This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
This package include a set of task factory interfaces that allow
the modification or editing of various objects within Cytoscape.
Definitions for View-Model related events and their listeners.
This package provides an API for augmenting a
RenderingEngine
s
node rendering with custom graphics.Visual Mapping basic API module.
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Uses of CyColumn in org.cytoscape.application.swing
Modifier and TypeMethodDescriptionCyColumnComboBox.getSelectedItem()
Override getSelectedItem() and use covariant return type to change return type to CyColumn.Modifier and TypeMethodDescriptionvoid
CyColumnSelector.update
(Collection<CyColumn> columns, Collection<String> selectedColumnNames) Updates the control to display the given CyColumn objects.ModifierConstructorDescriptionCyColumnComboBox
(CyColumnPresentationManager columnPresentationManager, Collection<CyColumn> columns) Creates a CyColumnComboBox with all entries enabled.CyColumnComboBox
(CyColumnPresentationManager columnPresentationManager, Collection<CyColumn> columns, Predicate<CyColumn> enabledPredicate) Creates a CyColumnComboBox.CyColumnComboBox
(CyColumnPresentationManager columnPresentationManager, Collection<CyColumn> columns, Predicate<CyColumn> enabledPredicate) Creates a CyColumnComboBox. -
Uses of CyColumn in org.cytoscape.group
Modifier and TypeMethodDescriptionAggregator<?>
CyGroupSettingsManager.getAggregator
(CyGroup group, CyColumn column) Get theAggregator
that will be used to aggregate the values in a specificCyColumn
for all of the nodes in a group onto the corresponding column in the group node.Aggregator<?>
CyGroupSettingsManager.getOverrideAggregation
(CyGroup group, CyColumn column) Get the override aggregation setting for a column (if any) in a specific group.Aggregator<?>
CyGroupSettingsManager.getOverrideAggregation
(CyColumn column) Get the override aggregation setting for a column (if any).void
CyGroupSettingsManager.setOverrideAggregation
(CyGroup group, CyColumn column, Aggregator<?> agg) set the override aggregation setting for a column in a group (if any).void
CyGroupSettingsManager.setOverrideAggregation
(CyColumn column, Aggregator<?> agg) set the override aggregation setting for a column (if any). -
Uses of CyColumn in org.cytoscape.group.data
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Uses of CyColumn in org.cytoscape.model
Modifier and TypeMethodDescriptionReturns the column with the specified fully-qualified name.default CyColumn
Returns the column for the specified name in the specified namespace.CyTable.getPrimaryKey()
Returns the column type of the primary key for this table.Modifier and TypeMethodDescriptionCyTable.getColumns()
Returns the column types for all columns in this table.default Collection<CyColumn>
CyTable.getColumns
(String namespace) Returns the column types for all columns in this table in the given namespace. -
Uses of CyColumn in org.cytoscape.task
Modifier and TypeFieldDescriptionprotected final CyColumn
AbstractTableCellTask.column
protected final CyColumn
AbstractTableColumnTask.column
TheCyColumn
that descendants will operate on.Modifier and TypeMethodDescriptionDynamicTaskFactoryProvisioner.createFor
(TableCellTaskFactory factory, CyColumn column, Object primaryKeyValue) DynamicTaskFactoryProvisioner.createFor
(TableColumnTaskFactory factory, CyColumn column) TableCellTaskFactory.createTaskIterator
(CyColumn column, Object primaryKeyValue) Used to provision this factory with aCyColumn
and a primary key that will be used to create tasks.TableColumnTaskFactory.createTaskIterator
(CyColumn column) Used to provision this factory with aCyColumn
that will be used to create tasks.default boolean
If this task factory implements theTogglable
interface then this method determines if the button or check box is on or off.default boolean
If this task factory implements theTogglable
interface then this method determines if the button or check box is on or off.boolean
Returns true if the supplied column and value are not null.boolean
Returns true if the supplied column is not null.boolean
Returns true if this task factory is ready to produce a TaskIterator.boolean
Returns true if this task factory is ready to produce a TaskIterator.ModifierConstructorDescriptionAbstractTableCellTask
(CyColumn column, Object primaryKeyValue) Initializes a Task that needs to operate on a CyTable cell entry.AbstractTableColumnTask
(CyColumn column) Initializes a Task that needs to operate on a CyTable column. -
Uses of CyColumn in org.cytoscape.task.edit
Modifier and TypeMethodDescriptionImportDataTableTaskFactory.createTaskIterator
(CyTable globalTable, boolean selectedNetworksOnly, boolean loadToUnassignedTable, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) Creates a task iterator for importing a table data in a network data table.JoinTablesTaskTaskFactory.createTaskIterator
(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) MergeTablesTaskFactory.createTaskIterator
(CyTable sourceTable, CyTable targetTable, List<String> sourceColumnsList, String sourceKeyColumn, boolean mergeColumnVirtual, boolean mapToNetworks, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType) Creates a task iterator for merging two data tables.RenameColumnTaskFactory.createTaskIterator
(CyColumn column, String newColumnName) Create a task iterator for renaming a selected column. -
Uses of CyColumn in org.cytoscape.util.json
Modifier and TypeMethodDescriptionReturns a JSON representation of CyColumn.Returns a JSON representation of a single CyEdge and its relevant data.Returns a JSON representation of a single CyNode and its relevant data.Returns a JSON representation of a table row.Modifier and TypeMethodDescriptionCyJSONUtil.cyColumnsToJson
(Collection<CyColumn> collection) Returns a list of references (via column name) for a collection of CyColumn. -
Uses of CyColumn in org.cytoscape.view.model.events
Modifier and TypeMethodDescriptionAboutToRemoveColumnViewEvent.getColumnView()
AddedColumnViewEvent.getColumnView()
ModifierConstructorDescriptionAboutToRemoveColumnViewEvent
(CyTableView source, View<CyColumn> columnView) AddedColumnViewEvent
(CyTableView source, View<CyColumn> columnView) -
Uses of CyColumn in org.cytoscape.view.model.table
Modifier and TypeMethodDescriptionCyTableView.getColumnView
(long viewSuid) Returns the View for the specified column using its view SUID as key.CyTableView.getColumnView
(String fullyQualifiedName) Returns the View for a specified column.CyTableView.getColumnView
(CyColumn column) Returns the View for a specified column.CyTableView.getColumnViews()
Returns all column views in this table view, in the same order asCyTable.getColumns()
.Modifier and TypeMethodDescriptionCyTableView.getColumnView
(CyColumn column) Returns the View for a specified column. -
Uses of CyColumn in org.cytoscape.view.presentation.customgraphics
Modifier and TypeMethodDescriptiondefault void
Cy2DGraphicLayer.draw
(Graphics2D g, CyTableView tableView, CyColumn column, CyRow row) This method is called by Cytoscape when aCyTableView
is being updated in order to let the custom graphics draw onto its cells. -
Uses of CyColumn in org.cytoscape.view.vizmap
Modifier and TypeMethodDescriptionTableVisualMappingManager.getAllVisualStylesMap()
Returns all directly associatedVisualStyle
s managed by this object.Modifier and TypeMethodDescriptionvoid
Apply Visual Style to a column view.TableVisualMappingManager.getVisualStyle
(View<CyColumn> viewModel) Returns theVisualStyle
directly associated with the target column view model.void
TableVisualMappingManager.setVisualStyle
(View<CyColumn> columnView, VisualStyle visualStyle) Set aVisualStyle
directly to the target column view model. -
Uses of CyColumn in org.cytoscape.view.vizmap.events.table
Modifier and TypeMethodDescriptionColumnVisualStyleSetEvent.getColumnView()
Get the The target column view model.ModifierConstructorDescriptionColumnVisualStyleSetEvent
(TableVisualMappingManager source, VisualStyle style, View<CyColumn> view) Creates the event.