Uses of Interface
org.cytoscape.model.CyEdge
Package
Description
This package provides application events/listeners, including
Cytoscape startup/shutdown, setCurrentNetwork/setCurrentNetworkView/
setSelectedNetwork.
This package defines the various interfaces, abstract classes, and enums
that represent the Cytoscape Swing Application API.
Interface to support execution of tasks as commands, including
the ability to get a list of namespaces, commands, and arguments,
and then execute those commands with a set of arguments.
Tunable classes useful for command applications
This package provides an API for creating and managing
groups in Cytoscape.
This package contains the various events and listeners
related to group management, creation, and destruction.
This package has the core interfaces of network and
table data structures that are foundational to Cytoscape.
This package contains the event interfaces necessary for communicating
with the classes in org.cytoscape.model.
This package contains rootnetwork and subnetwork extensions to the
CyNetwork interface that provide a more complex meta-network
data model.
This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
This package provides access to the available layout algorithms, as well as provides abstract layout
classes and layout information containers for the convenience of implementing other layout algorithms.
Module for View Models and Visual Properties.
Definitions for View-Model related events and their listeners.
Interfaces for VisualPropertyValues -- ArrowShape, LineType and NodeShape
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Uses of CyEdge in org.cytoscape.application.events
Modifier and TypeMethodDescriptionSetCurrentNetworkEvent.getSelectedEdges()
SetCurrentNetworkEvent.getUnselectedEdges()
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Uses of CyEdge in org.cytoscape.application.swing
Modifier and TypeMethodDescriptionCyEdgeViewContextMenuFactory.createMenuItem
(CyNetworkView netView, View<CyEdge> edgeView) This method should return a CyMenuItem to be added to the context menu of the specified edge view. -
Uses of CyEdge in org.cytoscape.command
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Uses of CyEdge in org.cytoscape.command.util
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Uses of CyEdge in org.cytoscape.group
Modifier and TypeMethodDescriptionCyGroup.getExternalEdgeList()
Returns the list of exterior edges connected to the nodes within this group.CyGroup.getInternalEdgeList()
Returns the list of edges contained within this group. -
Uses of CyEdge in org.cytoscape.group.events
ModifierConstructorDescriptionGroupEdgesAddedEvent
(CyGroup source, CyEdge edge) Constructs event.GroupEdgesRemovedEvent
(CyGroup source, CyEdge edge) Constructs event.ModifierConstructorDescriptionGroupEdgesAddedEvent
(CyGroup source, List<CyEdge> edges) Constructs event.GroupEdgesRemovedEvent
(CyGroup source, List<CyEdge> edges) Constructs event. -
Uses of CyEdge in org.cytoscape.model
Modifier and TypeMethodDescriptionThis method is used to create and add an edge to this network.CyNetwork.getEdge
(long suid) Return the CyEdge that has the SUID.Modifier and TypeMethodDescriptionCyNetwork.getAdjacentEdgeIterable
(CyNode node, CyEdge.Type edgeType) Gets an Iteable of edges that connect to this node.CyNetwork.getAdjacentEdgeList
(CyNode node, CyEdge.Type edgeType) Get the list of edges that connect to this node.CyNetwork.getConnectingEdgeList
(CyNode source, CyNode target, CyEdge.Type edgeType) Get the list of edges that connect two nodes.CyNetwork.getEdgeList()
Return a list of the edges in this network.CyTableUtil.getEdgesInState
(CyNetwork net, String columnName, boolean state) A utility method that returns a list of edges that have a boolean attribute in theCyNetwork.DEFAULT_ATTRS
namespace specified by columnName and are in the specified state.CyTableUtil.getSelectedEdges
(CyNetwork network) Equivalent toModifier and TypeMethodDescriptionboolean
CyNetwork.containsEdge
(CyEdge edge) Determine if this CyNetwork contains a particular edge.Modifier and TypeMethodDescriptionboolean
CyNetwork.removeEdges
(Collection<CyEdge> edges) Remove an edge from the network and delete the edge (if it only exists in this network). -
Uses of CyEdge in org.cytoscape.model.events
Modifier and TypeMethodDescriptionAboutToRemoveEdgesEvent.getEdges()
Returns the collection of edges about to be removed.SelectedNodesAndEdgesEvent.getSelectedEdges()
Returns all the edges in the network that are currently selected.SelectedNodesAndEdgesEvent.getUnselectedEdges()
Returns all the edges in the network that are currently unselected.ModifierConstructorDescriptionAboutToRemoveEdgesEvent
(CyNetwork source, Collection<CyEdge> edges) Constructs event.AddedEdgesEvent
(CyNetwork source, Collection<CyEdge> edges) Constructs event. -
Uses of CyEdge in org.cytoscape.model.subnetwork
Modifier and TypeMethodDescriptionA shortcut method that Creates a newCyEdge
in both this subnetwork AND in theCyRootNetwork
.Modifier and TypeMethodDescriptionboolean
Adds an edge to thisCySubNetwork
.void
CyRootNetwork.restoreEdge
(CyEdge edge) Causes the given edge to (temporarily) remain in the root network even if it has already been removed from all subnetworks.Modifier and TypeMethodDescriptionboolean
CySubNetwork.removeEdges
(Collection<CyEdge> edge) Removes a edge from thisCySubNetwork
but not from theCyRootNetwork
. -
Uses of CyEdge in org.cytoscape.task
Modifier and TypeFieldDescriptionAbstractEdgeViewTask.edgeView
The edge view that descendant tasks will operate on.Modifier and TypeMethodDescriptionEdgeViewTaskFactory.createTaskIterator
(View<CyEdge> edgeView, CyNetworkView networkView) Creates a new TaskIterator using the given edge view and network view.default boolean
EdgeViewTaskFactory.isOn
(View<CyEdge> edgeView, CyNetworkView networkView) If this task factory implements theTogglable
interface then this method determines if the button or check box is on or off.boolean
AbstractEdgeViewTaskFactory.isReady
(View<CyEdge> edgeView, CyNetworkView networkView) Returns true if the supplied edge and network views are not null.boolean
EdgeViewTaskFactory.isReady
(View<CyEdge> edgeView, CyNetworkView networkView) Returns true if this task factory is ready to produce a TaskIterator.ModifierConstructorDescriptionAbstractEdgeViewTask
(View<CyEdge> edgeView, CyNetworkView netView) Base constructor for all tasks that need an edge view to operate on. -
Uses of CyEdge in org.cytoscape.util.json
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Uses of CyEdge in org.cytoscape.view.layout
Modifier and TypeMethodDescriptionLayoutEdge.getEdge()
Return the Edge this LayoutEdge representsModifier and TypeMethodDescriptionprotected void
Add an edge to this partition assuming that the source and target nodes are not yet known.protected void
LayoutPartition.addEdge
(CyEdge edge, LayoutNode v1, LayoutNode v2, CyRow row) Add an edge to this partition assuming that the source and target nodes are known.ModifierConstructorDescriptionLayoutEdge
(CyEdge edge, CyRow row) Create a LayoutEdge that will contain information about this edge.LayoutEdge
(CyEdge edge, LayoutNode v1, LayoutNode v2, CyRow row) Create a LayoutEdge that will contains information about this edge, and that record that it connects LayoutNodes v1 and v2. -
Uses of CyEdge in org.cytoscape.view.model
Modifier and TypeMethodDescriptionCyNetworkViewSnapshot.getAdjacentEdgeIterable
(long nodeSuid) Returns an Iterable that contains the edges that are adjacent (connected) to the given node.CyNetworkViewSnapshot.getAdjacentEdgeIterable
(View<CyNode> node) Returns an Iterable that contains the edges that are adjacent (connected) to the given node.CyNetworkView.getEdgeView
(CyEdge edge) Returns a View for a specified Edge.CyNetworkViewSnapshot.getEdgeView
(long suid) Returns the immutable edge View for the given view SUID.CyNetworkView.getEdgeViews()
Returns a list of Views for all CyEdges in the network.CyNetworkView.getEdgeViewsIterable()
Returns an Iterable for all edge views in the network.CyNetworkViewSnapshot.getMutableEdgeView
(long suid) Returns the mutable edge View for the given view SUID, or null if the edge view no longer exists in the mutable network view.CyNetworkViewSnapshot.getTrackedEdges
(Object key) Returns edges that were configured to have their VisualProperties tracked usingCyNetworkViewFactoryConfig.addTrackedVisualProperty(Object, VisualProperty, java.util.function.Predicate)
and pass the predicate.Modifier and TypeMethodDescriptionCyNetworkView.getEdgeView
(CyEdge edge) Returns a View for a specified Edge.Modifier and TypeMethodDescriptionCyNetworkViewSnapshot.getEdgeInfo
(View<CyEdge> edge) Returns an object that provides more information about the given edge. -
Uses of CyEdge in org.cytoscape.view.model.events
Modifier and TypeMethodDescriptionAddedEdgeViewsEvent.getEdgeViews()
Returns new edge view added to the source network view object.ModifierConstructorDescriptionAboutToRemoveEdgeViewsEvent
(CyNetworkView source, Collection<View<CyEdge>> payload) Creates the event for about to be removed edge views.AddedEdgeViewsEvent
(CyNetworkView source, Collection<View<CyEdge>> edgeViews) Creates the event for new edge views. -
Uses of CyEdge in org.cytoscape.view.model.spacial
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Uses of CyEdge in org.cytoscape.view.presentation.property.values
Modifier and TypeMethodDescriptionHandle.calculateHandleLocation
(CyNetworkView netView, View<CyEdge> edgeView) Calculate absolute position of this handle for the given edge view.HandleFactory.createHandle
(CyNetworkView graphView, View<CyEdge> view, double x, double y) Creates a new instance of the Handle.void
Handle.defineHandle
(CyNetworkView netView, View<CyEdge> edgeView, double x, double y) Define this handle.