Uses of Interface
org.cytoscape.model.CyRow
Package
Description
This package defines the various interfaces, abstract classes, and enums
that represent the Cytoscape Swing Application API.
Interface to support execution of tasks as commands, including
the ability to get a list of namespaces, commands, and arguments,
and then execute those commands with a set of arguments.
Tunable classes useful for command applications
This package provides a mechanism for executing remote jobs from within Cytoscape.
This package has the core interfaces of network and
table data structures that are foundational to Cytoscape.
This package contains the event interfaces necessary for communicating
with the classes in org.cytoscape.model.
This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
This package provides access to the available layout algorithms, as well as provides abstract layout
classes and layout information containers for the convenience of implementing other layout algorithms.
Definitions for View-Model related events and their listeners.
This package provides an API for augmenting a
RenderingEngine
s
node rendering with custom graphics.Visual Mapping basic API module.
APIs for different mapping functions -- continuous mapping, discrete mapping and pass through mapping.
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Uses of CyRow in org.cytoscape.application.swing
ModifierConstructorDescriptionAbstractViewUpdater
(VisualProperty<S> vp, String columnName, Map<CyRow, View<?>> rowViewMap) Constructor. -
Uses of CyRow in org.cytoscape.command
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Uses of CyRow in org.cytoscape.command.util
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Uses of CyRow in org.cytoscape.jobs
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Uses of CyRow in org.cytoscape.model
Modifier and TypeMethodDescriptionCyNetwork.getRow
(CyIdentifiable entry) A convenience method that returns the row in the default table for this object.CyNetwork.getRow
(CyIdentifiable entry, String namespace) Returns the row for the specified table name for this object.Returns the row specified by the primary key object and if a row for the specified key does not yet exist in the table, a new row will be created and the new row will be returned.Modifier and TypeMethodDescriptionCyTable.getAllRows()
Return a list of all the rows stored in this data table.CyTable.getMatchingRows
(String fullyQualifiedName, Object value) Returns all the rows of a specified column that contain a certain value for that column.default Collection<CyRow>
CyTable.getMatchingRows
(String namespace, String columnName, Object value) Returns all the rows of a specified column that contain a certain value for that column. -
Uses of CyRow in org.cytoscape.model.events
Modifier and TypeMethodDescriptionRowSetRecord.getRow()
Returns theCyRow
of the data that was set.ModifierConstructorDescriptionRowSetRecord
(CyRow row, String column, Object value, Object rawValue) Constructs a RowSetRecord. -
Uses of CyRow in org.cytoscape.task
Modifier and TypeFieldDescriptionprotected final CyRow
AbstractRowTask.row
The row that descendants will operate on.Modifier and TypeMethodDescriptionDynamicTaskFactoryProvisioner.createFor
(RowTaskFactory factory, CyRow row) RowTaskFactory.createTaskIterator
(CyRow row) Provisions this factory with theCyRow
that will be passed into any task created by it.default boolean
If this task factory implements theTogglable
interface then this method determines if the button or check box is on or off.boolean
Returns true if this task factory is ready to produce a TaskIterator.ModifierConstructorDescriptionAbstractRowTask
(CyRow row) Base class constructor for all tasks that need to be provisioned with a CyRow. -
Uses of CyRow in org.cytoscape.util.json
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Uses of CyRow in org.cytoscape.view.layout
Modifier and TypeMethodDescriptionLayoutEdge.getRow()
Return the CyRow for this LayoutEdgeLayoutNode.getRow()
Accessor function to return the CyRow associated with this LayoutNode.Modifier and TypeMethodDescriptionprotected void
Add an edge to this partition assuming that the source and target nodes are not yet known.protected void
LayoutPartition.addEdge
(CyEdge edge, LayoutNode v1, LayoutNode v2, CyRow row) Add an edge to this partition assuming that the source and target nodes are known.ModifierConstructorDescriptionLayoutEdge
(CyEdge edge, CyRow row) Create a LayoutEdge that will contain information about this edge.LayoutEdge
(CyEdge edge, LayoutNode v1, LayoutNode v2, CyRow row) Create a LayoutEdge that will contains information about this edge, and that record that it connects LayoutNodes v1 and v2.LayoutNode
(View<CyNode> nodeView, int index, CyRow row) The main constructor for a LayoutNode. -
Uses of CyRow in org.cytoscape.view.model.events
ModifierConstructorDescriptionAboutToRemoveRowViewsEvent
(CyTableView source, Collection<View<CyRow>> payload) AddedRowViewsEvent
(CyTableView source, Collection<View<CyRow>> payload) -
Uses of CyRow in org.cytoscape.view.model.table
Modifier and TypeMethodDescriptionCyColumnView.getCellVisualProperty
(VisualProperty<? extends T> vp) CyTableView.getRowView
(CyRow row) Returns the View for the specified row.CyTableView.getRowViews()
Returns all row views in the table view.Modifier and TypeMethodDescriptionCyTableView.getRowView
(CyRow row) Returns the View for the specified row.Modifier and TypeMethodDescription<T> void
CyColumnView.setCellVisualProperty
(VisualProperty<? extends T> vp, Function<CyRow, T> mapping) Set a table visual property that will be applied to the cells in a column. -
Uses of CyRow in org.cytoscape.view.presentation.customgraphics
Modifier and TypeMethodDescriptiondefault void
Cy2DGraphicLayer.draw
(Graphics2D g, CyTableView tableView, CyColumn column, CyRow row) This method is called by Cytoscape when aCyTableView
is being updated in order to let the custom graphics draw onto its cells.CyCustomGraphics.getLayers
(CyTableView tableView, CyColumnView columnView, CyRow row) -
Uses of CyRow in org.cytoscape.view.vizmap
Modifier and TypeMethodDescriptionvoid
VisualMappingFunction.apply
(CyRow row, View<? extends CyIdentifiable> view) Apply mapping to the view model.void
VisualStyle.apply
(CyRow row, View<? extends CyIdentifiable> view) Apply Visual Property values only to the given View Object (node or edge).VisualMappingFunction.getMappedValue
(CyRow row) Returns the mapped value for a CyRow. -
Uses of CyRow in org.cytoscape.view.vizmap.mappings
Modifier and TypeMethodDescriptionvoid
AbstractVisualMappingFunction.apply
(CyRow row, View<? extends CyIdentifiable> view)