Uses of Package
org.cytoscape.work
Package
Description
This is the Cytoscape App API, which supports development of Cytoscape 3.X
apps in a manner similar to apps developed in Cytoscape 2.X.
This package defines the various interfaces, abstract classes, and enums
that represent the Cytoscape Swing Application API.
Interface to support execution of tasks as commands, including
the ability to get a list of namespaces, commands, and arguments,
and then execute those commands with a set of arguments.
Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
Interfaces for SOAP/REST web service clients, web services that return results as networks or tables, or query results.
This package provides factory interfaces to be used by anyone wishing to provide
export or writing capabilities to the rest of Cytoscape.
This package provides a mechanism for executing remote jobs from within Cytoscape.
This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
This package provides a variety of task factory interfaces for creating
new instances of network and other objects.
This package include a set of task factory interfaces that allow
the modification or editing of various objects within Cytoscape.
This package includes a set of task factory interfaces showing and hiding
nodes and edges within network views.
This package contains a set of task factory interfaces for reading
various Cytoscape objects from files and URLs.
This package includes a set of task factory interfaces for selecting, de-selecting and inverting selections
of nodes, edges, or combinations of both based on specific criteria.
This package contains a set of task factory interfaces used for
exporting or writing a variety of Cytoscape objects to files.
This package provides access to the available layout algorithms, as well as provides abstract layout
classes and layout information containers for the convenience of implementing other layout algorithms.
This package defines the task framework, where tasks are units of work.
This packages provides Swing-specific specialisations of concepts from work-api
This includes
TaskFactory
, TaskManager
,
and TaskIterator
.-
ClassDescription
-
-
ClassDescriptionA TaskFactory that is always ready to produce a TaskIterator.Returns an instance of a
TaskIterator
.An observer that gets notified when anObservableTask
finishes executing. -
ClassDescriptionProvides the standard implementation for most of the methods declared by the TunableHandler interface.A TaskIterator provides the functionality of sequencing
Task
s.An observer that gets notified when anObservableTask
finishes executing.Interface for classes that deal with reading out and writing backTunable
s and their properties.A factory service to create aTunableHandler
for a single type of object, determined by the type of the field or the return value of the getter method in the appropriate methods. -
ClassDescriptionA base class for tasks that need to be able to access the TaskIterator that contains them.An annotation type that can be applied to a method which returns a String that will be used for the title of a Tunable user interface dialog window.This interface specifies a unit of work to be executed asynchronously in its own
Thread
along with a user interface to display its progress, provide a means for the user to cancel theTask
, and show information about anyException
s thrown during its execution.A TaskIterator provides the functionality of sequencingTask
s. -
-
ClassDescriptionThis interface specifies a unit of work to be executed asynchronously in its own
Thread
along with a user interface to display its progress, provide a means for the user to cancel theTask
, and show information about anyException
s thrown during its execution. -
ClassDescriptionUsed by a
Task
's implementationrun
method to inform users of the status of its execution. -
ClassDescriptionA base class for tasks that need to be able to access the TaskIterator that contains them.This interface specifies a unit of work to be executed asynchronously in its own
Thread
along with a user interface to display its progress, provide a means for the user to cancel theTask
, and show information about anyException
s thrown during its execution.Returns an instance of aTaskIterator
.A TaskIterator provides the functionality of sequencingTask
s. -
ClassDescriptionReturns an instance of a
TaskIterator
.A TaskIterator provides the functionality of sequencingTask
s. -
ClassDescriptionReturns an instance of a
TaskIterator
.A TaskIterator provides the functionality of sequencingTask
s. -
-
ClassDescriptionReturns an instance of a
TaskIterator
.A TaskIterator provides the functionality of sequencingTask
s.An observer that gets notified when anObservableTask
finishes executing. -
-
ClassDescriptionReturns an instance of a
TaskIterator
.A TaskIterator provides the functionality of sequencingTask
s. -
ClassDescriptionA base class for tasks that need to be able to access the TaskIterator that contains them.This interface specifies a unit of work to be executed asynchronously in its own
Thread
along with a user interface to display its progress, provide a means for the user to cancel theTask
, and show information about anyException
s thrown during its execution.A TaskIterator provides the functionality of sequencingTask
s.Used by aTask
's implementationrun
method to inform users of the status of its execution. -
ClassDescriptionIndicates the status of a task iterator when it has finished for
TaskObserver
s.ATask
that notifies its observers when it is finished executing.This interface specifies a unit of work to be executed asynchronously in its ownThread
along with a user interface to display its progress, provide a means for the user to cancel theTask
, and show information about anyException
s thrown during its execution.Returns an instance of aTaskIterator
.A TaskIterator provides the functionality of sequencingTask
s.Used by aTask
's implementationrun
method to inform users of the status of its execution.Used by theshowMessage
andsetStatusMessage
methods to indicate the severity of the message.An observer that gets notified when anObservableTask
finishes executing.Interface for classes that deal with reading out and writing backTunable
s and their properties.A factory service to create aTunableHandler
for a single type of object, determined by the type of the field or the return value of the getter method in the appropriate methods.This is a type of tunable interceptor that reads and modifies the values annotated with theTunable
annotation.TunableRecorder is a special type of tunable interceptor that reads the state of the tunables but does not modify the value of the tunables.The states the the validator can return. -
ClassDescriptionInterface for classes that deal with reading out and writing back
Tunable
s and their properties.A factory service to create aTunableHandler
for a single type of object, determined by the type of the field or the return value of the getter method in the appropriate methods. -
ClassDescriptionProvides the standard implementation for most of the methods declared by the TunableHandler interface.A convenience implementation of TunableHandlerFactory that will construct a TunableHandler of the specified type given the TunableHandler in question has at least two constructors, one with Field, Object, Tunable parameters and the other with Method, Method, Object, Tunable parameters.Interface for classes that deal with reading out and writing back
Tunable
s and their properties.A factory service to create aTunableHandler
for a single type of object, determined by the type of the field or the return value of the getter method in the appropriate methods.