Uses of Interface
org.cytoscape.group.CyGroup

Packages that use CyGroup

Package	Description
org.cytoscape.group	This package provides an API for creating and managing groups in Cytoscape.
org.cytoscape.group.data	An api for configuring CyGroups.
org.cytoscape.group.events	This package contains the various events and listeners related to group management, creation, and destruction.

Uses of CyGroup in org.cytoscape.group

Methods in org.cytoscape.group that return CyGroup

Modifier and Type	Method	Description
CyGroup	CyGroupFactory.createGroup(CyNetwork network, boolean register)	Creates a CyGroup object in the referenced network.
CyGroup	CyGroupFactory.createGroup(CyNetwork network, List<CyNode> nodes, List<CyEdge> edges, boolean register)	Creates a CyGroup object in the referenced network initially populated with the supplied nodes.
CyGroup	CyGroupFactory.createGroup(CyNetwork network, CyNode node, boolean register)	Creates a CyGroup object in the referenced network from an existing CyNode.
CyGroup	CyGroupFactory.createGroup(CyNetwork network, CyNode node, List<CyNode> nodes, List<CyEdge> edges, boolean register)	Creates a CyGroup object in the referenced network from an existing CyNode.
CyGroup	CyGroupManager.getGroup(CyNode node, CyNetwork network)	Return the group the corresponds to a particular node in a CyNetwork.

Methods in org.cytoscape.group that return types with arguments of type CyGroup

Modifier and Type	Method	Description
Set<CyGroup>	CyGroupManager.getGroupSet(CyNetwork network)	Provides the set of all the groups known to the groups manager in a particular network.
List<CyGroup>	CyGroupManager.getGroupsForNode(CyNode node)	Return the list of CyGroups this node is in.
List<CyGroup>	CyGroupManager.getGroupsForNode(CyNode node, CyNetwork network)	Return the list of CyGroups this node is in for a particular network.

Methods in org.cytoscape.group with parameters of type CyGroup

Modifier and Type	Method	Description
void	CyGroupManager.addGroup(CyGroup group)	Registers a group with the group manager.
void	CyGroupManager.destroyGroup(CyGroup group)	Destroy a group.
Aggregator<?>	CyGroupSettingsManager.getAggregator(CyGroup group, CyColumn column)	Get the Aggregator that will be used to aggregate the values in a specific CyColumn for all of the nodes in a group onto the corresponding column in the group node.
Aggregator<?>	CyGroupSettingsManager.getDefaultAggregation(CyGroup group, Class<?> ovClass)	Get the Aggregator for a specific column type as expressed as a java Class that will be used in the specified CyGroup.
Aggregator<?>	CyGroupSettingsManager.getDefaultListAggregation(CyGroup group, Class<?> ovClass)	Get the Aggregator for a specific List column type as expressed as a java Class that will be used in the specified CyGroup.
CyGroupSettingsManager.DoubleClickAction	CyGroupSettingsManager.getDoubleClickAction(CyGroup group)	Get the current CyGroupSettingsManager.DoubleClickAction for the specified group.
boolean	CyGroupSettingsManager.getEnableAttributeAggregation(CyGroup group)	Get the setting for whether or not we're enabling aggregation for a specific group.
CyGroupSettingsManager.GroupViewType	CyGroupSettingsManager.getGroupViewType(CyGroup group)	Get the current CyGroupSettingsManager.GroupViewType for the specified group.
Aggregator<?>	CyGroupSettingsManager.getOverrideAggregation(CyGroup group, CyColumn column)	Get the override aggregation setting for a column (if any) in a specific group.
boolean	CyGroupSettingsManager.getUseNestedNetworks(CyGroup group)	Get the setting for whether or not to create a nested network view on collapsed nodes for the specified CyGroup.
void	CyGroupSettingsManager.setDefaultAggregation(CyGroup group, Class<?> ovClass, String aggName)	Set the Aggregator for a specific column type as expressed as a java Class that will be used in the specified CyGroup.
void	CyGroupSettingsManager.setDefaultAggregation(CyGroup group, Class<?> ovClass, Aggregator<?> agg)	Set the Aggregator for a specific column type as expressed as a java Class that will be used in the specified CyGroup.
void	CyGroupSettingsManager.setDefaultListAggregation(CyGroup group, Class<?> ovClass, String aggName)	Set the Aggregator for a specific List column type as expressed as a java Class that will be used in the specified CyGroup.
void	CyGroupSettingsManager.setDefaultListAggregation(CyGroup group, Class<?> ovClass, Aggregator<?> agg)	Set the Aggregator for a specific List column type as expressed as a java Class that will be used in the specified CyGroup.
void	CyGroupSettingsManager.setDoubleClickAction(CyGroup group, CyGroupSettingsManager.DoubleClickAction action)	Set the CyGroupSettingsManager.DoubleClickAction for a specific group.
void	CyGroupSettingsManager.setEnableAttributeAggregation(CyGroup group, boolean aggregate)	Set the setting for whether or not we're aggregating values for member nodes onto the group node for a specific group.
void	CyGroupSettingsManager.setGroupViewType(CyGroup group, CyGroupSettingsManager.GroupViewType action)	Set the CyGroupSettingsManager.GroupViewType for a specific group.
void	CyGroupSettingsManager.setOverrideAggregation(CyGroup group, CyColumn column, Aggregator<?> agg)	set the override aggregation setting for a column in a group (if any).
void	CyGroupSettingsManager.setUseNestedNetworks(CyGroup group, boolean useNestedNetwork)	Set the setting for whether or not to create a nested network view on collapsed nodes for a specific CyGroup.

Method parameters in org.cytoscape.group with type arguments of type CyGroup

Modifier and Type	Method	Description
void	CyGroupManager.addGroups(List<CyGroup> groups)	Registers a list of groups with the group manager.

Uses of CyGroup in org.cytoscape.group.data

Methods in org.cytoscape.group.data with parameters of type CyGroup

Modifier and Type	Method	Description
<T> T	Aggregator.aggregate(CyTable table, CyGroup group, CyColumn column)	Aggregate the column for the members of the specified group into the group.

Uses of CyGroup in org.cytoscape.group.events

Constructors in org.cytoscape.group.events with parameters of type CyGroup

Constructor	Description
GroupAboutToBeDestroyedEvent(CyGroupManager source, CyGroup group)	Constructs event.
GroupAboutToBeRemovedEvent(CyGroup source, CyNetwork network)	Constructs event.
GroupAboutToCollapseEvent(CyGroup source, CyNetwork network, boolean collapsing)	Constructs event.
GroupAddedEvent(CyGroupManager source, CyGroup group)	Constructs event.
GroupAddedToNetworkEvent(CyGroup source, CyNetwork network)	Constructs event.
GroupCollapsedEvent(CyGroup source, CyNetwork network, boolean collapsed)	Constructs event.
GroupEdgesAddedEvent(CyGroup source, List<CyEdge> edges)	Constructs event.
GroupEdgesAddedEvent(CyGroup source, CyEdge edge)	Constructs event.
GroupEdgesRemovedEvent(CyGroup source, List<CyEdge> edges)	Constructs event.
GroupEdgesRemovedEvent(CyGroup source, CyEdge edge)	Constructs event.
GroupNodesAddedEvent(CyGroup source, List<CyNode> nodes)	Constructs event.
GroupNodesAddedEvent(CyGroup source, CyNode node)	Constructs event.
GroupNodesRemovedEvent(CyGroup source, List<CyNode> nodes)	Constructs event.
GroupNodesRemovedEvent(CyGroup source, CyNode node)	Constructs event.