Uses of Interface
org.cytoscape.model.subnetwork.CyRootNetwork

Packages that use CyRootNetwork

Package	Description
org.cytoscape.group	This package provides an API for creating and managing groups in Cytoscape.
org.cytoscape.io.read	Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
org.cytoscape.model.subnetwork	This package contains rootnetwork and subnetwork extensions to the CyNetwork interface that provide a more complex meta-network data model.
org.cytoscape.task	This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
org.cytoscape.task.edit	This package include a set of task factory interfaces that allow the modification or editing of various objects within Cytoscape.
org.cytoscape.task.read	This package contains a set of task factory interfaces for reading various Cytoscape objects from files and URLs.

Uses of CyRootNetwork in org.cytoscape.group

Methods in org.cytoscape.group that return CyRootNetwork

Modifier and Type	Method	Description
CyRootNetwork	CyGroup.getRootNetwork()	Return the root network for this group.

Uses of CyRootNetwork in org.cytoscape.io.read

Methods in org.cytoscape.io.read that return CyRootNetwork

Modifier and Type	Method	Description
protected CyRootNetwork	AbstractCyNetworkReader.getRootNetwork()	Get target network collection, i.e., parent root network for all networks to be loaded.

Uses of CyRootNetwork in org.cytoscape.model.subnetwork

Methods in org.cytoscape.model.subnetwork that return CyRootNetwork

Modifier and Type	Method	Description
CyRootNetwork	CyRootNetworkManager.getRootNetwork(CyNetwork n)	Converts a CyNetwork to a CyRootNetwork
CyRootNetwork	CySubNetwork.getRootNetwork()	Return the CyRootNetwork that contains this CySubNetwork.

Uses of CyRootNetwork in org.cytoscape.task

Fields in org.cytoscape.task with type parameters of type CyRootNetwork

Modifier and Type	Field	Description
protected Collection<CyRootNetwork>	AbstractRootNetworkCollectionTask.networks	The collection of root-networks that subclasses will operate on.

Method parameters in org.cytoscape.task with type arguments of type CyRootNetwork

Modifier and Type	Method	Description
TaskIterator	RootNetworkCollectionTaskFactory.createTaskIterator(Collection<CyRootNetwork> networks)	Provisions this factory with the collection of root-networks that will be passed into any task created by it.
boolean	AbstractRootNetworkCollectionTaskFactory.isReady(Collection<CyRootNetwork> networks)	Returns true if the supplied collection of root-networks is not null or empty.
boolean	RootNetworkCollectionTaskFactory.isReady(Collection<CyRootNetwork> networks)	Returns true if this task factory is ready to produce a task iterator.

Constructor parameters in org.cytoscape.task with type arguments of type CyRootNetwork

Constructor	Description
AbstractRootNetworkCollectionTask(Collection<CyRootNetwork> networks)

Uses of CyRootNetwork in org.cytoscape.task.edit

Methods in org.cytoscape.task.edit with parameters of type CyRootNetwork

Modifier and Type	Method	Description
TaskIterator	ImportDataTableTaskFactory.createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, boolean loadToUnassignedTable, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)	Creates a task iterator for importing a table data in a network data table.
TaskIterator	JoinTablesTaskTaskFactory.createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)
TaskIterator	MergeTablesTaskFactory.createTaskIterator(CyTable sourceTable, CyTable targetTable, List<String> sourceColumnsList, String sourceKeyColumn, boolean mergeColumnVirtual, boolean mapToNetworks, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)	Creates a task iterator for merging two data tables.

Uses of CyRootNetwork in org.cytoscape.task.read

Methods in org.cytoscape.task.read with parameters of type CyRootNetwork

Modifier and Type	Method	Description
TaskIterator	LoadMultipleNetworkFilesTaskFactory.createTaskIterator(List<File> files, CyRootNetwork rootNetwork)	Creates a task iterator for loading one or more networks from supported files (e.g.