Uses of Class org.cytoscape.work.TaskIterator (Cytoscape Swing App API (swing-app-api) 3.8.1 API)

Packages that use TaskIterator
Package	Description
org.cytoscape.command	Interface to support execution of tasks as commands, including the ability to get a list of namespaces, commands, and arguments, and then execute those commands with a set of arguments.
org.cytoscape.io.read	Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
org.cytoscape.io.webservice	Interfaces for SOAP/REST web service clients, web services that return results as networks or tables, or query results.
org.cytoscape.task	This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
org.cytoscape.task.create	This package provides a variety of task factory interfaces for creating new instances of network and other objects.
org.cytoscape.task.edit	This package include a set of task factory interfaces that allow the modification or editing of various objects within Cytoscape.
org.cytoscape.task.hide	This package includes a set of task factory interfaces showing and hiding nodes and edges within network views.
org.cytoscape.task.read	This package contains a set of task factory interfaces for reading various Cytoscape objects from files and URLs.
org.cytoscape.task.select	This package includes a set of task factory interfaces for selecting, de-selecting and inverting selections of nodes, edges, or combinations of both based on specific criteria.
org.cytoscape.task.write	This package contains a set of task factory interfaces used for exporting or writing a variety of Cytoscape objects to files.
org.cytoscape.view.layout	This package provides access to the available layout algorithms, as well as provides abstract layout classes and layout information containers for the convenience of implementing other layout algorithms.
org.cytoscape.work	This package defines the task framework, where tasks are units of work.

Uses of TaskIterator in org.cytoscape.command

Methods in org.cytoscape.command that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	CommandExecutorTaskFactory.`createTaskIterator(File commandFile, TaskObserver observer)`	Creates a task iterator that will execute the specified commands.
`TaskIterator`	CommandExecutorTaskFactory.`createTaskIterator(String namespace, String command, Map<String,Object> args, TaskObserver observer)`	Creates a task iterator that will execute the specified command.
`TaskIterator`	CommandExecutorTaskFactory.`createTaskIterator(List<String> commands, TaskObserver observer)`	Creates a task iterator that will execute the specified commands.
`TaskIterator`	CommandExecutorTaskFactory.`createTaskIterator(TaskObserver observer, String... commands)`	Creates a task iterator that will execute the specified commands.

Uses of TaskIterator in org.cytoscape.io.read

Methods in org.cytoscape.io.read that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	InputStreamTaskFactory.`createTaskIterator(InputStream is, String inputName)`	Sets the input stream that will be read by the Reader created from this factory.

Uses of TaskIterator in org.cytoscape.io.webservice

Methods in org.cytoscape.io.webservice that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	WebServiceClient.`createTaskIterator(Object query)`	Set query for the tasks to be executed.

Uses of TaskIterator in org.cytoscape.task

Methods in org.cytoscape.task that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	EdgeViewTaskFactory.`createTaskIterator(View<CyEdge> edgeView, CyNetworkView networkView)`	Creates a new TaskIterator using the given edge view and network view.
`TaskIterator`	NetworkCollectionTaskFactory.`createTaskIterator(Collection<CyNetwork> networks)`	Provisions this factory with the collection of networks that will be passed into any task created by it.
`TaskIterator`	NetworkTaskFactory.`createTaskIterator(CyNetwork network)`	Provisions this factory with the `CyNetwork` that will be passed into any task created by it.
`TaskIterator`	NetworkViewCollectionTaskFactory.`createTaskIterator(Collection<CyNetworkView> networkViews)`	Provisions this factory with the collection of network views that will be passed into any task created by it.
`TaskIterator`	NetworkViewLocationTaskFactory.`createTaskIterator(CyNetworkView networkView, Point2D javaPt, Point2D xformPt)`	Creates a task iterator using the specified network view and points.
`TaskIterator`	NetworkViewTaskFactory.`createTaskIterator(CyNetworkView networkView)`	Creates a new TaskIterator using the given `CyNetworkView`
`TaskIterator`	NodeViewTaskFactory.`createTaskIterator(View<CyNode> nodeView, CyNetworkView networkView)`	Provisions this factory with the node view and its associated network view, both of which will be passed into any task that will be created by this factory.
`TaskIterator`	RootNetworkCollectionTaskFactory.`createTaskIterator(Collection<CyRootNetwork> networks)`	Provisions this factory with the collection of root-networks that will be passed into any task created by it.
`TaskIterator`	RowTaskFactory.`createTaskIterator(CyRow row)`	Provisions this factory with the `CyRow` that will be passed into any task created by it.
`TaskIterator`	TableCellTaskFactory.`createTaskIterator(CyColumn column, Object primaryKeyValue)`	Used to provision this factory with a `CyColumn` and a primary key that will be used to create tasks.
`TaskIterator`	TableColumnTaskFactory.`createTaskIterator(CyColumn column)`	Used to provision this factory with a `CyColumn` that will be used to create tasks.
`TaskIterator`	TableTaskFactory.`createTaskIterator(CyTable table)`	Used to provision this factory with a `CyTable` that will be used to create tasks.

Uses of TaskIterator in org.cytoscape.task.create

Methods in org.cytoscape.task.create that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	CloneNetworkTaskFactory.`createTaskIterator(CyNetwork network)`	Returns a TaskIterator that clones the given network.
`TaskIterator`	CreateNetworkViewTaskFactory.`createTaskIterator(Collection<CyNetwork> networks, CyNetworkViewFactory factory)`	Use this method to create a network view for each of the passed networks.
`TaskIterator`	NewNetworkSelectedNodesAndEdgesTaskFactory.`createTaskIterator(CyNetwork network)`	Returns a TaskIterator that creates a new network from the selected nodes and edges in the given network.
`TaskIterator`	NewNetworkSelectedNodesOnlyTaskFactory.`createTaskIterator(CyNetwork network)`	Returns a TaskIterator that creates a new network from the selected nodes in the given network.
`TaskIterator`	NewSessionTaskFactory.`createTaskIterator(boolean destroyCurrentSession)`	Creates a task iterator for creating a new session and destroying the current session based on the input.

Uses of TaskIterator in org.cytoscape.task.edit

Methods in org.cytoscape.task.edit that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	EditNetworkTitleTaskFactory.`createTaskIterator(CyNetwork network, String title)`	Creates a task iterator for editing a network's title.
`TaskIterator`	ImportDataTableTaskFactory.`createTaskIterator(CyTableReader reader)`	Creates a task iterator for importing a table data in a network data table.
`TaskIterator`	ImportDataTableTaskFactory.`createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, boolean loadToUnassignedTable, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)`	Creates a task iterator for importing a table data in a network data table.
`TaskIterator`	JoinTablesTaskTaskFactory.`createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)`
`TaskIterator`	MapGlobalToLocalTableTaskFactory.`createTaskIterator(CyTable globalTable, Collection<CyTable> localTables)`	Creates a task iterator for mapping a selected global table to a selected local table.
`TaskIterator`	MapTableToNetworkTablesTaskFactory.`createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, Class<? extends CyIdentifiable> tableType)`
`TaskIterator`	MergeTablesTaskFactory.`createTaskIterator(CyTable sourceTable, CyTable targetTable, List<String> sourceColumnsList, String sourceKeyColumn, boolean mergeColumnVirtual, boolean mapToNetworks, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> tableType)`	Creates a task iterator for merging two data tables.
`TaskIterator`	RenameColumnTaskFactory.`createTaskIterator(CyColumn column, String newColumnName)`	Create a task iterator for renaming a selected column.

Uses of TaskIterator in org.cytoscape.task.hide

Methods in org.cytoscape.task.hide that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	HideTaskFactory.`createTaskIterator(CyNetworkView view, Collection<CyNode> nodes, Collection<CyEdge> edges)`	Creates a task iterator that will hide the given nodes and edges.
`TaskIterator`	UnHideTaskFactory.`createTaskIterator(CyNetworkView view, Collection<CyNode> nodes, Collection<CyEdge> edges)`	Creates a task iterator that will show the given nodes and edges.

Uses of TaskIterator in org.cytoscape.task.read

Methods in org.cytoscape.task.read that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	LoadMultipleNetworkFilesTaskFactory.`createTaskIterator(List<File> files, CyRootNetwork rootNetwork)`	Creates a task iterator for loading one or more networks from supported files (e.g.
`TaskIterator`	LoadNetworkFileTaskFactory.`createTaskIterator(File file)`	Creates a task iterator for loading a network from a file.
`TaskIterator`	LoadNetworkFileTaskFactory.`createTaskIterator(File file, TaskObserver observer)`	Creates a task iterator for loading a network from a file.
`TaskIterator`	LoadNetworkURLTaskFactory.`createTaskIterator(URL url, TaskObserver observer)`	Creates a task iterator for loading a URL into a network.
`TaskIterator`	LoadTableFileTaskFactory.`createTaskIterator(File file)`	Creates the task iterator for importing an attribute file to a table.
`TaskIterator`	LoadTableURLTaskFactory.`createTaskIterator(URL url)`	Creates the task iterator for importing an attribute file to a table.
`TaskIterator`	LoadVizmapFileTaskFactory.`createTaskIterator(File file)`	Creates a task iterator for loading files into visual styles.
`TaskIterator`	LoadVizmapFileTaskFactory.`createTaskIterator(File file, TaskObserver observer)`	Creates a task iterator for loading files into visual styles.
`TaskIterator`	OpenSessionTaskFactory.`createTaskIterator(File file)`	Creates a task iterator for loading a session from a file.
`TaskIterator`	OpenSessionTaskFactory.`createTaskIterator(File file, boolean confirm)`	Creates a task iterator for loading a session from a file, with an option to let the user confirm it before disposing the current session if it is not empty.
`TaskIterator`	LoadNetworkURLTaskFactory.`loadCyNetworks(URL url)`	Creates a task iterator for loading a URL into a network.

Uses of TaskIterator in org.cytoscape.task.select

Methods in org.cytoscape.task.select that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	SelectFromFileListTaskFactory.`createTaskIterator(CyNetwork network, File file)`	Creates a task iterator for selecting items of a network based on a file.

Uses of TaskIterator in org.cytoscape.task.write

Methods in org.cytoscape.task.write that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	ExportNetworkTaskFactory.`createTaskIterator(CyNetwork network, File file)`	Creates the task iterator for exporting networks.
`TaskIterator`	ExportNetworkViewTaskFactory.`createTaskIterator(CyNetworkView view, File file)`	Creates the task iterator for exporting network views.
`TaskIterator`	ExportSelectedNetworkTaskFactory.`createTaskIterator(File file)`	Creates the task iterator for exporting the selected network.
`TaskIterator`	ExportTableTaskFactory.`createTaskIterator(CyTable table, File file)`	Returns a task factory that write the specified table to the specified file.
`TaskIterator`	ExportVizmapTaskFactory.`createTaskIterator(File file)`	Creates a task iterator for exporting the vizmap file.
`TaskIterator`	SaveSessionAsTaskFactory.`createTaskIterator(File file)`	Creates a task iterator for saving the session in a specified file.

Uses of TaskIterator in org.cytoscape.view.layout

Methods in org.cytoscape.view.layout that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	CyLayoutAlgorithm.`createTaskIterator(CyNetworkView networkView, Object layoutContext, Set<View<CyNode>> nodesToLayOut, String layoutAttribute)`	Creates a task iterator containing the layout tasks.

Uses of TaskIterator in org.cytoscape.work

Methods in org.cytoscape.work that return TaskIterator
Modifier and Type	Method	Description
`TaskIterator`	TaskFactory.`createTaskIterator()`	Returns an iterator containing a sequence of `Task`s.
`TaskIterator`	TunableSetter.`createTaskIterator(TaskIterator taskIterator, Map<String,Object> tunableValues)`	This method takes as input a TaskIterator and a map of tunable names to tunable values and applies those values to any tunables found in the Tasks found in the TaskIterator.
`TaskIterator`	TunableSetter.`createTaskIterator(TaskIterator taskIterator, Map<String,Object> tunableValues, TaskObserver observer)`	This version of createTaskIterator adds a TaskObserver argument.
`TaskIterator`	AbstractTask.`getTaskIterator()`

Methods in org.cytoscape.work with parameters of type TaskIterator
Modifier and Type	Method	Description
`void`	TaskIterator.`append(TaskIterator taskIterator)`	Adds the tasks in the given TaskIterator to the end of this iterator.
`TaskIterator`	TunableSetter.`createTaskIterator(TaskIterator taskIterator, Map<String,Object> tunableValues)`	This method takes as input a TaskIterator and a map of tunable names to tunable values and applies those values to any tunables found in the Tasks found in the TaskIterator.
`TaskIterator`	TunableSetter.`createTaskIterator(TaskIterator taskIterator, Map<String,Object> tunableValues, TaskObserver observer)`	This version of createTaskIterator adds a TaskObserver argument.
`void`	TaskManager.`execute(TaskIterator iterator)`	This method is called to execute the `Task`s in a `TaskIterator` provided by a `TaskFactory`.
`void`	TaskManager.`execute(TaskIterator iterator, TaskObserver observer)`	This method is called to execute the `Task`s in a `TaskIterator` provided by a `TaskFactory`.
`void`	TaskIterator.`insertTasksAfter(Task referenceTask, TaskIterator newTasks)`	Inserts "newTasks" immediately after "referenceTask".
`protected void`	AbstractTask.`insertTasksAfterCurrentTask(TaskIterator newTasks)`	Inserts "newTasks" after the current Task, in the TaskIterator that is being managed by this class.
`void`	AbstractTask.`setTaskIterator(TaskIterator taskIterator)`	This method is used by a `TaskIterator` to set itself on the newly added Task.