Uses of Interface
org.cytoscape.view.model.View

Packages that use View

Package	Description
org.cytoscape.application.swing	This package defines the various interfaces, abstract classes, and enums that represent the Cytoscape Swing Application API.
org.cytoscape.io.write	This package provides factory interfaces to be used by anyone wishing to provide export or writing capabilities to the rest of Cytoscape.
org.cytoscape.task	This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
org.cytoscape.view.layout	This package provides access to the available layout algorithms, as well as provides abstract layout classes and layout information containers for the convenience of implementing other layout algorithms.
org.cytoscape.view.model	Module for View Models and Visual Properties.
org.cytoscape.view.model.events	Definitions for View-Model related events and their listeners.
org.cytoscape.view.model.spacial
org.cytoscape.view.model.table
org.cytoscape.view.presentation	API set for rendering engines (visualizers).
org.cytoscape.view.presentation.annotations	This package provides support for graphical annotations associated with a Cytoscape CyNetworkView.
org.cytoscape.view.presentation.customgraphics	This package provides an API for augmenting a RenderingEngines node rendering with custom graphics.
org.cytoscape.view.presentation.property.values	Interfaces for VisualPropertyValues -- ArrowShape, LineType and NodeShape
org.cytoscape.view.vizmap	Visual Mapping basic API module.
org.cytoscape.view.vizmap.events.table
org.cytoscape.view.vizmap.mappings	APIs for different mapping functions -- continuous mapping, discrete mapping and pass through mapping.

Uses of View in org.cytoscape.application.swing

Methods in org.cytoscape.application.swing with parameters of type View

Modifier and Type	Method	Description
CyMenuItem	CyEdgeViewContextMenuFactory.createMenuItem(CyNetworkView netView, View<CyEdge> edgeView)	This method should return a CyMenuItem to be added to the context menu of the specified edge view.
CyMenuItem	CyNodeViewContextMenuFactory.createMenuItem(CyNetworkView netView, View<CyNode> nodeView)	This method should return a CyMenuItem to be added to the context menu of the specified node view.

Constructor parameters in org.cytoscape.application.swing with type arguments of type View

Modifier	Constructor	Description
	AbstractViewUpdater(VisualProperty<S> vp, String columnName, Map<CyRow,View<?>> rowViewMap)	Constructor.

Uses of View in org.cytoscape.io.write

Methods in org.cytoscape.io.write with parameters of type View

Modifier and Type	Method	Description
CyWriter	PresentationWriterManager.getWriter(View<?> view, RenderingEngine<?> re, CyFileFilter filter, File file)	Returns the CyWriter Task that will attempt to write the specified view to the specified file of the specified file type.
CyWriter	PresentationWriterManager.getWriter(View<?> view, RenderingEngine<?> re, CyFileFilter filter, OutputStream os)	Returns the CyWriter Task that will attempt to write the specified view to the specified output stream of the specified file type.

Uses of View in org.cytoscape.task

Fields in org.cytoscape.task declared as View

Modifier and Type	Field	Description
protected View<CyEdge>	AbstractEdgeViewTask.edgeView	The edge view that descendant tasks will operate on.
protected View<CyNode>	AbstractNodeViewTask.nodeView	The node view that descendants of this class will operate on.

Methods in org.cytoscape.task with parameters of type View

Modifier and Type	Method	Description
TaskIterator	EdgeViewTaskFactory.createTaskIterator(View<CyEdge> edgeView, CyNetworkView networkView)	Creates a new TaskIterator using the given edge view and network view.
TaskIterator	NodeViewTaskFactory.createTaskIterator(View<CyNode> nodeView, CyNetworkView networkView)	Provisions this factory with the node view and its associated network view, both of which will be passed into any task that will be created by this factory.
default boolean	EdgeViewTaskFactory.isOn(View<CyEdge> edgeView, CyNetworkView networkView)	If this task factory implements the Togglable interface then this method determines if the button or check box is on or off.
default boolean	NodeViewTaskFactory.isOn(View<CyNode> nodeView, CyNetworkView networkView)	If this task factory implements the Togglable interface then this method determines if the button or check box is on or off.
boolean	AbstractEdgeViewTaskFactory.isReady(View<CyEdge> edgeView, CyNetworkView networkView)	Returns true if the supplied edge and network views are not null.
boolean	AbstractNodeViewTaskFactory.isReady(View<CyNode> nodeView, CyNetworkView networkView)	Returns true of the supplied network and node views are not null.
boolean	EdgeViewTaskFactory.isReady(View<CyEdge> edgeView, CyNetworkView networkView)	Returns true if this task factory is ready to produce a TaskIterator.
boolean	NodeViewTaskFactory.isReady(View<CyNode> nodeView, CyNetworkView networkView)	Returns true if the node view and network view are in a state that is ready to be processed by the generated tasks and false otherwise.

Constructors in org.cytoscape.task with parameters of type View

Modifier	Constructor	Description
	AbstractEdgeViewTask(View<CyEdge> edgeView, CyNetworkView netView)	Base constructor for all tasks that need an edge view to operate on.
	AbstractNodeViewTask(View<CyNode> nodeView, CyNetworkView netView)	Base class constructor for all tasks that need to operate on a node view and possibly its associated network view.

Uses of View in org.cytoscape.view.layout

Fields in org.cytoscape.view.layout with type parameters of type View

Modifier and Type	Field	Description
static Set<View<CyNode>>	CyLayoutAlgorithm.ALL_NODE_VIEWS	A convenience declaration for an empty set signifying that all node views should be laid out when creating the task iterator.
protected Set<View<CyNode>>	AbstractLayoutTask.nodesToLayOut	The node views that will be laid out by the algorithm.

Methods in org.cytoscape.view.layout that return View

Modifier and Type	Method	Description
View<CyNode>	LayoutNode.getNodeView()	Accessor function to return the View associated with this LayoutNode.

Methods in org.cytoscape.view.layout with parameters of type View

Modifier and Type	Method	Description
protected void	LayoutPartition.addNode(CyNetwork network, View<CyNode> nv, boolean locked)	Add a node to this partition.

Method parameters in org.cytoscape.view.layout with type arguments of type View

Modifier and Type	Method	Description
TaskIterator	CyLayoutAlgorithm.createTaskIterator(CyNetworkView networkView, Object layoutContext, Set<View<CyNode>> nodesToLayOut, String layoutAttribute)	Creates a task iterator containing the layout tasks.
boolean	AbstractLayoutAlgorithm.isReady(CyNetworkView view, Object tunableContext, Set<View<CyNode>> nodesToLayout, String attributeName)
boolean	CyLayoutAlgorithm.isReady(CyNetworkView networkView, Object layoutContext, Set<View<CyNode>> nodesToLayOut, String layoutAttribute)	Returns true if the task factory is ready to produce a task iterator.

Constructors in org.cytoscape.view.layout with parameters of type View

Modifier	Constructor	Description
	LayoutNode(View<CyNode> nodeView, int index, CyRow row)	The main constructor for a LayoutNode.

Constructor parameters in org.cytoscape.view.layout with type arguments of type View

Modifier	Constructor	Description
	AbstractLayoutTask(String displayName, CyNetworkView networkView, Set<View<CyNode>> nodesToLayOut, String layoutAttribute, UndoSupport undo)	Constructor.
	AbstractParallelPartitionLayoutTask(String displayName, boolean singlePartition, CyNetworkView networkView, Set<View<CyNode>> nodesToLayOut, String layoutAttribute, UndoSupport undo)	Creates a new AbstractPartitionLayoutTask object.
	AbstractPartitionLayoutTask(String displayName, boolean singlePartition, CyNetworkView networkView, Set<View<CyNode>> nodesToLayOut, String layoutAttribute, UndoSupport undo)	Creates a new AbstractPartitionLayoutTask object.
	LayoutPartition(CyNetworkView networkView, Collection<View<CyNode>> nodeSet, EdgeWeighter edgeWeighter)	LayoutPartition: use this constructor to create a LayoutPartition that includes the entire network.

Uses of View in org.cytoscape.view.model

Subinterfaces of View in org.cytoscape.view.model

Modifier and Type	Interface	Description
interface	CyNetworkView	Additional methods for CyNetworkView.
interface	CyNetworkViewSnapshot	An immutable snapshot of a CyNetworkView created using the CyNetworkView.createSnapshot() method.
interface	NullCyNetworkView	A CyNetwork with no corresponding view.

Methods in org.cytoscape.view.model that return View

Modifier and Type	Method	Description
View<CyEdge>	CyNetworkView.getEdgeView(CyEdge edge)	Returns a View for a specified Edge.
View<CyEdge>	CyNetworkViewSnapshot.getEdgeView(long suid)	Returns the immutable edge View for the given view SUID.
View<CyEdge>	CyNetworkViewSnapshot.getMutableEdgeView(long suid)	Returns the mutable edge View for the given view SUID, or null if the edge view no longer exists in the mutable network view.
View<CyNode>	CyNetworkViewSnapshot.getMutableNodeView(long suid)	Returns the mutable node View for the given view SUID, or null if the node view no longer exists in the mutable network view.
View<CyNode>	CyNetworkView.getNodeView(CyNode node)	Returns a View for a specified Node.
View<CyNode>	CyNetworkViewSnapshot.getNodeView(long suid)	Returns the immutable node View for the given view SUID.
View<CyNode>	SnapshotEdgeInfo.getSourceNodeView()	Returns the source node view;
View<CyNode>	SnapshotEdgeInfo.getTargetNodeView()	Returns the target node view;

Methods in org.cytoscape.view.model that return types with arguments of type View

Modifier and Type	Method	Description
static <T, V extends Comparable<V>> Comparator<View<T>>	VisualProperty.comparing(VisualProperty<V> vp)	Utility method for sorting collections of Views according to the value of a VisualProperty.
Iterable<View<CyEdge>>	CyNetworkViewSnapshot.getAdjacentEdgeIterable(long nodeSuid)	Returns an Iterable that contains the edges that are adjacent (connected) to the given node.
Iterable<View<CyEdge>>	CyNetworkViewSnapshot.getAdjacentEdgeIterable(View<CyNode> node)	Returns an Iterable that contains the edges that are adjacent (connected) to the given node.
Collection<View<? extends CyIdentifiable>>	CyNetworkView.getAllViews()	Returns a list of all View including those for Nodes, Edges, and Network.
Collection<View<CyEdge>>	CyNetworkView.getEdgeViews()	Returns a list of Views for all CyEdges in the network.
default Iterable<View<CyEdge>>	CyNetworkView.getEdgeViewsIterable()	Returns an Iterable for all edge views in the network.
Collection<View<CyNode>>	CyNetworkView.getNodeViews()	Returns a list of Views for all CyNodes in the network.
default Iterable<View<CyNode>>	CyNetworkView.getNodeViewsIterable()	Returns an Iterable for all node views in the network.
Collection<View<CyEdge>>	CyNetworkViewSnapshot.getTrackedEdges(Object key)	Returns edges that were configured to have their VisualProperties tracked using CyNetworkViewFactoryConfig.addTrackedVisualProperty(Object, VisualProperty, java.util.function.Predicate) and pass the predicate.
Collection<View<CyNode>>	CyNetworkViewSnapshot.getTrackedNodes(Object key)	Returns nodes that were configured to have their VisualProperties tracked using CyNetworkViewFactoryConfig.addTrackedVisualProperty(Object, VisualProperty, java.util.function.Predicate) and pass the predicate.

Methods in org.cytoscape.view.model with parameters of type View

Modifier and Type	Method	Description
Iterable<View<CyEdge>>	CyNetworkViewSnapshot.getAdjacentEdgeIterable(View<CyNode> node)	Returns an Iterable that contains the edges that are adjacent (connected) to the given node.
SnapshotEdgeInfo	CyNetworkViewSnapshot.getEdgeInfo(View<CyEdge> edge)	Returns an object that provides more information about the given edge.
SnapshotNodeInfo	CyNetworkViewSnapshot.getNodeInfo(View<CyNode> node)	Returns an object that provides more information about the given node.

Method parameters in org.cytoscape.view.model with type arguments of type View

Modifier and Type	Method	Description
default void	View.batch(Consumer<View<S>> viewAction)	Performs the given action on this View object.
default void	View.batch(Consumer<View<S>> viewAction, boolean setDirty)	Performs the given action on this View object.

Uses of View in org.cytoscape.view.model.events

Methods in org.cytoscape.view.model.events that return View

Modifier and Type	Method	Description
View<CyColumn>	AboutToRemoveColumnViewEvent.getColumnView()
View<CyColumn>	AddedColumnViewEvent.getColumnView()
View<T>	ViewChangeRecord.getView()	Returns the view that has been changed.

Methods in org.cytoscape.view.model.events that return types with arguments of type View

Modifier and Type	Method	Description
Collection<View<CyEdge>>	AddedEdgeViewsEvent.getEdgeViews()	Returns new edge view added to the source network view object.
Collection<View<CyNode>>	AddedNodeViewsEvent.getNodeViews()	Returns new node view object.

Constructors in org.cytoscape.view.model.events with parameters of type View

Modifier	Constructor	Description
	AboutToRemoveColumnViewEvent(CyTableView source, View<CyColumn> columnView)
	AddedColumnViewEvent(CyTableView source, View<CyColumn> columnView)
	ViewChangeRecord(View<T> view, VisualProperty<?> vp, Object value)	Constructor.
	ViewChangeRecord(View<T> view, VisualProperty<?> vp, Object value, boolean lockedValue)

Constructor parameters in org.cytoscape.view.model.events with type arguments of type View

Modifier	Constructor	Description
	AboutToRemoveEdgeViewsEvent(CyNetworkView source, Collection<View<CyEdge>> payload)	Creates the event for about to be removed edge views.
	AboutToRemoveNodeViewsEvent(CyNetworkView source, Collection<View<CyNode>> payload)	Creates the event for about to be removed node views.
	AboutToRemoveRowViewsEvent(CyTableView source, Collection<View<CyRow>> payload)
	AddedEdgeViewsEvent(CyNetworkView source, Collection<View<CyEdge>> edgeViews)	Creates the event for new edge views.
	AddedNodeViewsEvent(CyNetworkView source, Collection<View<CyNode>> nodeViews)	Creates the event for a new node view.
	AddedRowViewsEvent(CyTableView source, Collection<View<CyRow>> payload)

Uses of View in org.cytoscape.view.model.spacial

Methods in org.cytoscape.view.model.spacial that return View

Modifier and Type	Method	Description
View<CyEdge>	EdgeSpacialIndex2DEnumerator.nextEdge()	Returns the next edge.
View<CyEdge>	EdgeSpacialIndex2DEnumerator.nextEdgeWithNodeExtents(float[] sourceExtents, float[] targetExtents, View<CyNode>[] nodes)	Returns the next edge.
View<CyNode>	NodeSpacialIndex2DEnumerator.nextNode()	Returns the next node.
View<CyNode>	NodeSpacialIndex2DEnumerator.nextNodeExtents(float[] extents)	Returns the next node.

Methods in org.cytoscape.view.model.spacial with parameters of type View

Modifier and Type	Method	Description
View<CyEdge>	EdgeSpacialIndex2DEnumerator.nextEdgeWithNodeExtents(float[] sourceExtents, float[] targetExtents, View<CyNode>[] nodes)	Returns the next edge.

Uses of View in org.cytoscape.view.model.table

Subinterfaces of View in org.cytoscape.view.model.table

Modifier and Type	Interface	Description
interface	CyColumnView	This interface is meant for internal use, it should not be used by Apps.
interface	CyTableView	Additional methods for table views.

Methods in org.cytoscape.view.model.table that return View

Modifier and Type	Method	Description
View<CyColumn>	CyTableView.getColumnView(long viewSuid)	Returns the View for the specified column using its view SUID as key.
default View<CyColumn>	CyTableView.getColumnView(String fullyQualifiedName)	Returns the View for a specified column.
View<CyColumn>	CyTableView.getColumnView(CyColumn column)	Returns the View for a specified column.
View<CyRow>	CyTableView.getRowView(CyRow row)	Returns the View for the specified row.

Methods in org.cytoscape.view.model.table that return types with arguments of type View

Modifier and Type	Method	Description
Collection<View<CyColumn>>	CyTableView.getColumnViews()	Returns all column views in this table view, in the same order as CyTable.getColumns().
Collection<View<CyRow>>	CyTableView.getRowViews()	Returns all row views in the table view.

Uses of View in org.cytoscape.view.presentation

Methods in org.cytoscape.view.presentation that return View

Modifier and Type	Method	Description
View<T>	RenderingEngine.getViewModel()	Returns View being rendered.

Methods in org.cytoscape.view.presentation with parameters of type View

Modifier and Type	Method	Description
RenderingEngine<T>	RenderingEngineFactory.createRenderingEngine(Object visualizationContainer, View<T> viewModel)	A view model can have multiple presentations.
Collection<RenderingEngine<?>>	RenderingEngineManager.getRenderingEngines(View<?> viewModel)	Get rendering engines for the given view model.

Uses of View in org.cytoscape.view.presentation.annotations

Methods in org.cytoscape.view.presentation.annotations with parameters of type View

Modifier and Type	Method	Description
void	ArrowAnnotation.setTarget(View<? extends CyIdentifiable> target)	Set the target for this arrow assuming the target is a View object.

Uses of View in org.cytoscape.view.presentation.customgraphics

Methods in org.cytoscape.view.presentation.customgraphics with parameters of type View

Modifier and Type	Method	Description
void	Cy2DGraphicLayer.draw(Graphics2D g, Shape shape, CyNetworkView networkView, View<? extends CyIdentifiable> view)	This method is called by Cytoscape when a CyNetworkView is being updated in order to let the custom graphics draw onto its Graphics2D object.
List<T>	CyCustomGraphics.getLayers(CyNetworkView networkView, View<? extends CyIdentifiable> grView)	Get layers that belong to this object.

Uses of View in org.cytoscape.view.presentation.property.values

Methods in org.cytoscape.view.presentation.property.values with parameters of type View

Modifier and Type	Method	Description
Point2D	Handle.calculateHandleLocation(CyNetworkView netView, View<CyEdge> edgeView)	Calculate absolute position of this handle for the given edge view.
Handle	HandleFactory.createHandle(CyNetworkView graphView, View<CyEdge> view, double x, double y)	Creates a new instance of the Handle.
void	Handle.defineHandle(CyNetworkView netView, View<CyEdge> edgeView, double x, double y)	Define this handle.

Uses of View in org.cytoscape.view.vizmap

Methods in org.cytoscape.view.vizmap with parameters of type View

Modifier and Type	Method	Description
void	VisualMappingFunction.apply(CyRow row, View<? extends CyIdentifiable> view)	Apply mapping to the view model.
void	VisualStyle.apply(CyRow row, View<? extends CyIdentifiable> view)	Apply Visual Property values only to the given View Object (node or edge).
void	VisualStyle.apply(View<CyColumn> columnView)	Apply Visual Style to the entire table view.
VisualStyle	TableVisualMappingManager.getVisualStyle(View<CyColumn> viewModel)	Returns the VisualStyle associated with the target column view model.
void	TableVisualMappingManager.setVisualStyle(View<CyColumn> viewModel, VisualStyle visualStyle)	Set a VisualStyle to the target column view model.

Uses of View in org.cytoscape.view.vizmap.events.table

Methods in org.cytoscape.view.vizmap.events.table that return View

Modifier and Type	Method	Description
View<CyColumn>	ColumnVisualStyleSetEvent.getColumnView()	Get the The target column view model.

Constructors in org.cytoscape.view.vizmap.events.table with parameters of type View

Modifier	Constructor	Description
	ColumnVisualStyleSetEvent(TableVisualMappingManager source, VisualStyle style, View<CyColumn> view)	Creates the event.

Uses of View in org.cytoscape.view.vizmap.mappings

Methods in org.cytoscape.view.vizmap.mappings with parameters of type View

Modifier and Type	Method	Description
void	AbstractVisualMappingFunction.apply(CyRow row, View<? extends CyIdentifiable> view)