Uses of Interface
org.cytoscape.model.CyRow

Packages that use CyRow

Package	Description
org.cytoscape.application.swing	This package defines the various interfaces, abstract classes, and enums that represent the Cytoscape Swing Application API.
org.cytoscape.command	Interface to support execution of tasks as commands, including the ability to get a list of namespaces, commands, and arguments, and then execute those commands with a set of arguments.
org.cytoscape.command.util	Tunable classes useful for command applications
org.cytoscape.jobs	This package provides a mechanism for executing remote jobs from within Cytoscape.
org.cytoscape.model	This package has the core interfaces of network and table data structures that are foundational to Cytoscape.
org.cytoscape.model.events	This package contains the event interfaces necessary for communicating with the classes in org.cytoscape.model.
org.cytoscape.task	This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
org.cytoscape.util.json
org.cytoscape.view.layout	This package provides access to the available layout algorithms, as well as provides abstract layout classes and layout information containers for the convenience of implementing other layout algorithms.
org.cytoscape.view.vizmap	Visual Mapping basic API module.
org.cytoscape.view.vizmap.mappings	APIs for different mapping functions -- continuous mapping, discrete mapping and pass through mapping.

Uses of CyRow in org.cytoscape.application.swing

Constructor parameters in org.cytoscape.application.swing with type arguments of type CyRow

Constructor	Description
AbstractViewUpdater(VisualProperty<S> vp, String columnName, Map<CyRow,View<?>> rowViewMap)	Constructor.

Uses of CyRow in org.cytoscape.command

Methods in org.cytoscape.command that return types with arguments of type CyRow

Modifier and Type	Method	Description
List<CyRow>	StringToModel.getRowList(CyTable table, String rowlist)	Convert a string request for a rowlist into a list of CyRows.

Uses of CyRow in org.cytoscape.command.util

Methods in org.cytoscape.command.util that return types with arguments of type CyRow

Modifier and Type	Method	Description
List<CyRow>	RowList.getValue()	Get the list of rows

Method parameters in org.cytoscape.command.util with type arguments of type CyRow

Modifier and Type	Method	Description
void	RowList.setValue(List<CyRow> rowList)	Set the list of rows

Uses of CyRow in org.cytoscape.jobs

Method parameters in org.cytoscape.jobs with type arguments of type CyRow

Modifier and Type	Method	Description
default CyJobData	CyJobDataService.addData(CyJobData data, String key, CyTable table, List<CyRow> rows, List<String> columns)	An optional method to add table data to a CyJobData item.

Uses of CyRow in org.cytoscape.model

Methods in org.cytoscape.model that return CyRow

Modifier and Type	Method	Description
CyRow	CyNetwork.getRow(CyIdentifiable entry)	A convenience method that returns the row in the default table for this object.
CyRow	CyNetwork.getRow(CyIdentifiable entry, String namespace)	Returns the row for the specified table name for this object.
CyRow	CyTable.getRow(Object primaryKey)	Returns the row specified by the primary key object and if a row for the specified key does not yet exist in the table, a new row will be created and the new row will be returned.

Methods in org.cytoscape.model that return types with arguments of type CyRow

Modifier and Type	Method	Description
List<CyRow>	CyTable.getAllRows()	Return a list of all the rows stored in this data table.
Collection<CyRow>	CyTable.getMatchingRows(String fullyQualifiedName, Object value)	Returns all the rows of a specified column that contain a certain value for that column.
default Collection<CyRow>	CyTable.getMatchingRows(String namespace, String columnName, Object value)	Returns all the rows of a specified column that contain a certain value for that column.

Uses of CyRow in org.cytoscape.model.events

Methods in org.cytoscape.model.events that return CyRow

Modifier and Type	Method	Description
CyRow	RowSetRecord.getRow()	Returns the CyRow of the data that was set.

Constructors in org.cytoscape.model.events with parameters of type CyRow

Constructor	Description
RowSetRecord(CyRow row, String column, Object value, Object rawValue)	Constructs a RowSetRecord.

Uses of CyRow in org.cytoscape.task

Fields in org.cytoscape.task declared as CyRow

Modifier and Type	Field	Description
protected CyRow	AbstractRowTask.row	The row that descendants will operate on.

Methods in org.cytoscape.task with parameters of type CyRow

Modifier and Type	Method	Description
TaskIterator	RowTaskFactory.createTaskIterator(CyRow row)	Provisions this factory with the CyRow that will be passed into any task created by it.
boolean	RowTaskFactory.isReady(CyRow row)	Returns true if this task factory is ready to produce a TaskIterator.

Constructors in org.cytoscape.task with parameters of type CyRow

Constructor	Description
AbstractRowTask(CyRow row)	Base class constructor for all tasks that need to be provisioned with a CyRow.

Uses of CyRow in org.cytoscape.util.json

Methods in org.cytoscape.util.json with parameters of type CyRow

Modifier and Type	Method	Description
String	CyJSONUtil.toJson(CyRow cyRow, CyColumn... columns)	Returns a JSON representation of a table row.

Uses of CyRow in org.cytoscape.view.layout

Methods in org.cytoscape.view.layout that return CyRow

Modifier and Type	Method	Description
CyRow	LayoutEdge.getRow()	Return the CyRow for this LayoutEdge
CyRow	LayoutNode.getRow()	Accessor function to return the CyRow associated with this LayoutNode.

Methods in org.cytoscape.view.layout with parameters of type CyRow

Modifier and Type	Method	Description
protected void	LayoutPartition.addEdge(CyEdge edge, CyRow row)	Add an edge to this partition assuming that the source and target nodes are not yet known.
protected void	LayoutPartition.addEdge(CyEdge edge, LayoutNode v1, LayoutNode v2, CyRow row)	Add an edge to this partition assuming that the source and target nodes are known.

Constructors in org.cytoscape.view.layout with parameters of type CyRow

Constructor	Description
LayoutEdge(CyEdge edge, CyRow row)	Create a LayoutEdge that will contain information about this edge.
LayoutEdge(CyEdge edge, LayoutNode v1, LayoutNode v2, CyRow row)	Create a LayoutEdge that will contains information about this edge, and that record that it connects LayoutNodes v1 and v2.
LayoutNode(View<CyNode> nodeView, int index, CyRow row)	The main constructor for a LayoutNode.

Uses of CyRow in org.cytoscape.view.vizmap

Methods in org.cytoscape.view.vizmap with parameters of type CyRow

Modifier and Type	Method	Description
void	VisualMappingFunction.apply(CyRow row, View<? extends CyIdentifiable> view)	Apply mapping to the view model.
void	VisualStyle.apply(CyRow row, View<? extends CyIdentifiable> view)	Apply Visual Property values only to the given View Object (node or edge).
V	VisualMappingFunction.getMappedValue(CyRow row)	Returns the mapped value for a CyRow.

Uses of CyRow in org.cytoscape.view.vizmap.mappings

Methods in org.cytoscape.view.vizmap.mappings with parameters of type CyRow

Modifier and Type	Method	Description
void	AbstractVisualMappingFunction.apply(CyRow row, View<? extends CyIdentifiable> view)