Presentations Presentation Modules Protocol Modules Templates Code

Presentations

Presentations compiled for recent or upcoming presentations.
Feel free to copy, adapt and reuse!

• EBI 2021 Single Cell Workshop
  • Network Analysis
  • Advanced Visualization
  • Cytoscape Single Cell Analysis
  • Cytoscape Futures
• Introduction to Cytoscape and Network Biology
• Advanced Cytoscape Automation
• Intro to RCy3 - Cytoscape Automation
• Network Biology - PSPG
• Train-the-Trainers
• Scientific Visualization: Network Visualization with Cytoscape
• Protein-protein Interactions I: Tools and Approaches
• Protein-protein Interactions II: Tools and Approaches
• more coming soon...

Presentation Modules

Modular topics to be used in compiling diverse presentations.
Feel free to copy, adapt and reuse!

• Finding Network Data
• Introduction to Automation
• Introduction to Cytoscape
• Introduction to Network Biology
• Network Analysis
• Network Taxonomy
• Network Visualization
• Network Visualization Challenge
• PPI Data Sources
• Pre-Workshop Instructions: Automation

Protocols

Training protocols to be used individually and self-guided.
Feel free to copy, adapt and reuse!

• Basic Data Visualization
• Cytoscape Support
• Filtering by Selection
• Functional Enrichment
• Loading Networks
• Importing Data From Tables
• Making Tutorials
• Mapping Data to Visual Properties
• Network Layout
• Pathway Data Visulization
• Saving Results
• Selecting Subnetworks
• Tour of Cytoscape
• Working with OSGi Console

Templates

Templates for starting new training materials from scratch.
Feel free to copy, adapt and reuse!

• Cytoscape Presentation (code)
• Module A (code)
• Module B (code)
• Cytoscape Protocol (code)
• Module A (code)
• Module B (code)